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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:54.6 nTPM
GTEx:69.0 nTPM
FANTOM5:47.6 Scaled Tags Per Million
Pig:7.8 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 54.6
Sample id Sample description nTPM
Putamen
nTPM: 54.6
2482 Female, age 94, left hemisphere 58.3
1838 Male, age 80, right hemisphere 56.3
1937 Female, age 91, right hemisphere 54.7
2466 Female, age 79, unknown 53.7
2489 Female, age 72, unknown 53.5
1829 Male, age 74, unknown 53.0
2647 Male, age 75, left hemisphere 52.9

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 69.0
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 69.0
Samples: 205

Max nTPM: 193.1
Min nTPM: 20.5
Std nTPM: 27.1
Median nTPM: 63.6
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 193.1
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 149.9
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 148.7
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 134.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 133.0
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 132.1
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 128.9
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 125.9
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 122.7
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 122.1
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 120.8
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 118.4
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 116.3
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 115.9
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 113.7
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 111.5
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 108.4
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 106.9
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 106.5
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 103.8
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 103.7
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 103.5
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 103.2
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 103.2
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 101.3
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 100.7
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 99.9
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 99.5
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 98.8
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 97.7
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 97.1
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 97.0
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 96.3
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 94.8
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 94.8
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 92.0
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 92.0
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 90.7
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 89.9
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 89.7
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 89.4
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 89.2
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 87.9
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 87.5
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 86.9
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 86.7
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 86.7
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 86.1
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 84.7
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 84.7
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 84.4
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 84.2
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 83.9
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 82.7
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 81.3
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 80.7
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 80.7
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 80.6
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 80.2
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 79.6
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 79.1
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 79.0
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 78.9
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 78.2
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 78.1
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 77.8
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 77.5
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 76.6
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 75.9
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 75.6
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 75.3
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 75.2
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 74.8
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 74.3
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 74.0
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 73.9
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 73.8
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 73.7
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 73.1
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 73.1
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 73.0
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 72.5
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 72.1
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 71.6
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 71.4
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 71.0
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 70.5
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 69.9
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 69.8
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 69.6
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 68.7
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 68.6
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 68.1
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 67.1
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 66.8
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 66.3
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 65.9
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 65.4
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 64.4
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 63.9
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 63.8
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 63.6
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 63.6
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 63.2
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 63.2
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 62.4
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 62.0
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 61.8
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 61.8
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 61.7
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 61.5
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 61.4
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 61.1
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 61.1
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 61.0
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 60.8
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 60.0
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 59.8
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 59.8
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 59.7
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 59.6
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 59.3
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 58.6
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 58.5
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 58.2
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 57.8
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 57.2
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 56.7
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 56.5
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 56.5
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 56.5
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 56.3
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 56.0
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 55.8
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 55.5
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 54.9
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 54.6
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 54.1
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 54.0
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 53.8
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 53.2
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 53.0
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 52.8
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 52.4
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 52.3
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 52.2
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 51.9
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 51.8
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 51.4
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 51.2
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 50.9
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 50.4
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 50.2
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 49.6
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 49.0
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 49.0
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 48.8
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 48.6
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 48.4
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 48.4
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 48.2
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 47.9
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 47.8
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 47.7
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 47.3
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 47.2
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 47.1
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 46.5
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 45.9
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 45.5
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 45.3
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 45.0
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 44.8
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 44.1
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 43.8
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 43.5
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 43.4
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 42.7
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 42.5
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 42.4
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 41.7
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 41.5
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 41.2
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 40.5
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 40.3
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 38.9
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 38.8
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 38.6
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 38.5
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 38.4
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 36.4
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 35.5
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 35.3
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 35.0
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 34.5
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 31.7
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 31.5
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 27.6
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 24.8
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 23.1
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 23.1
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 22.6
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 21.4
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 20.8
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 20.5
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 47.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 47.6
FF:10176-103C5 60 years, female 47.6

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 7.8
Pig sample Sample description nTPM
Putamen
nTPM: 7.8
Samples: 4

Max nTPM: 9.2
Min nTPM: 6.2
Sample A Female 9.2
Sample B Female 6.2
Sample C Male 8.0
Sample D Male 7.8

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