MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:28.7 nTPM
HPA:28.7 nTPM
GTEx:91.6 nTPM
FANTOM5:71.4 Scaled Tags Per Million
Pig:75.4 nTPM
Mouse:43.5 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.5
2666 Male, age 74, left hemisphere 27.8
1870 Female, age 42, unknown 26.3
1827 Male, age 72, unknown 23.8
2828 Female, age 72, unknown 23.2
1830 Male, age 51, unknown 22.7
2019 Male, age 18, unknown 22.2
2586 Male, age 75, left hemisphere 21.8
1833 Male, age 53, unknown 20.7
2411 Female, age 72, unknown 20.2
2219 Male, age 76, both hemispheres 16.6
Dorsal raphe nucleus
nTPM: 22.7
2016 Female, age 72, unknown 24.0
2750 Male, age 76, both hemispheres 23.7
1828 Male, age 53, unknown 22.9
2047 Male, age 72, unknown 22.9
2298 Female, age 72, unknown 20.0
Inferior colliculus
nTPM: 23.6
1890 Male, age 53, unknown 25.9
2849 Male, age 72, unknown 24.6
1848 Female, age 42, unknown 23.1
2097 Female, age 72, unknown 20.7
Median raphe nucleus
nTPM: 27.5
2220 Male, age 76, midline 27.5
Pedunculopontine tegmental nucleus
nTPM: 28.7
2338 Male, age 61, both hemispheres 33.2
2334 Male, age 80, both hemispheres 29.9
1921 Female, age 85, both hemispheres 22.9
Periaquaductal grey, anterior
nTPM: 21.1
2502 Female, age 75, unknown 23.2
1947 Male, age 18, unknown 20.3
1795 Male, age 51, unknown 19.8
Periaquaductal grey, dorsal
nTPM: 22.5
2850 Male, age 76, both hemispheres 27.9
1831 Male, age 72, unknown 21.9
1840 Male, age 53, unknown 21.5
2464 Female, age 72, unknown 18.8
Periaquaductal grey, lateral
nTPM: 22.4
2140 Male, age 76, both hemispheres 25.8
2053 Male, age 18, unknown 21.9
2272 Male, age 74, both hemispheres 19.6
Pretectal area
nTPM: 22.5
1817 Female, age 42, unknown 29.6
2007 Male, age 72, unknown 26.0
1815 Male, age 53, unknown 24.6
2316 Male, age 76, right hemisphere 24.1
1816 Male, age 51, unknown 23.3
2825 Male, age 18, unknown 22.8
1944 Female, age 72, unknown 22.7
2667 Female, age 75, unknown 19.9
2407 Male, age 75, both hemispheres 18.7
2224 Female, age 72, unknown 18.2
2273 Male, age 74, both hemispheres 17.2
Red nucleus
nTPM: 26.1
1821 Female, age 72, unknown 31.4
2588 Male, age 74, left hemisphere 27.7
2503 Female, age 72, unknown 27.3
1954 Female, age 42, unknown 27.2
1865 Male, age 51, unknown 27.0
2725 Female, age 75, unknown 26.5
2227 Male, age 72, unknown 25.9
2823 Male, age 76, right hemisphere 25.8
2785 Male, age 18, unknown 24.1
2769 Male, age 72, unknown 23.8
2584 Male, age 75, left hemisphere 23.4
1904 Male, age 53, unknown 23.2
Substantia nigra
nTPM: 21.1
2665 Male, age 74, both hemispheres 27.0
1889 Female, age 72, unknown 25.7
2699 Male, age 18, unknown 21.8
2590 Female, age 75, unknown 20.8
1851 Male, age 51, unknown 20.2
2583 Male, age 75, right hemisphere 20.0
1916 Female, age 42, unknown 19.9
2409 Female, age 72, unknown 19.6
1941 Male, age 53, unknown 18.9
2241 Male, age 72, unknown 17.0
Superior colliculus
nTPM: 22.8
2587 Male, age 74, left hemisphere 25.9
1913 Female, age 42, unknown 23.9
1995 Male, age 72, unknown 23.5
1839 Male, age 51, unknown 23.4
1796 Male, age 53, unknown 23.2
2261 Male, age 18, unknown 23.1
1895 Male, age 76, right hemisphere 22.2
2668 Female, age 75, unknown 22.2
2087 Female, age 72, unknown 22.1
2664 Male, age 75, both hemispheres 18.2
Ventral tegmental area
nTPM: 22.1
2223 Female, age 72, unknown 24.4
2218 Male, age 76, both hemispheres 24.3
2021 Male, age 53, unknown 23.4
1915 Female, age 42, unknown 21.9
1942 Male, age 51, unknown 20.7
2410 Female, age 72, unknown 18.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 91.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 91.6
Samples: 139

Max nTPM: 245.2
Min nTPM: 36.2
Std nTPM: 37.1
Median nTPM: 80.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 245.2
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 213.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 193.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 183.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 182.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 171.2
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 166.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 164.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 161.4
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 160.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 155.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 71.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 71.4
FF:10158-103A5 76 years, female 71.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 75.4
Pig sample Sample description nTPM
Midbrain
nTPM: 68.4
Samples: 4

Max nTPM: 82.1
Min nTPM: 56.8
Sample A Female 82.1
Sample B Female 71.8
Sample C Male 56.8
Sample D Male 63.0
Periaqueductal gray
nTPM: 57.8
Samples: 3

Max nTPM: 59.6
Min nTPM: 55.9
Sample B Female 59.6
Sample C Male 57.8
Sample D Male 55.9
Substantia nigra
nTPM: 71.0
Samples: 4

Max nTPM: 86.7
Min nTPM: 58.0
Sample A Female 72.3
Sample B Female 86.7
Sample C Male 58.0
Sample D Male 67.0
Superior colliculi
nTPM: 75.4
Samples: 4

Max nTPM: 84.0
Min nTPM: 62.6
Sample A Female 80.8
Sample B Female 84.0
Sample C Male 62.6
Sample D Male 74.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 43.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 43.5
Samples: 4

Max nTPM: 45.5
Min nTPM: 40.4
Sample A Male 42.9
Sample B Male 45.5
Sample C Female 40.4
Sample D Female 45.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69817037 Antisense, RP_050510_02_E01, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.