BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:20.4 nTPM
HPA:20.4 nTPM
GTEx:22.0 nTPM
FANTOM5:8.6 Scaled Tags Per Million
Pig:3.6 nTPM
Mouse:5.5 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 20.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 15.9
2481 Female, age 94, left hemisphere 18.0
2289 Male, age 61, right hemisphere 17.2
1781 Male, age 74, unknown 16.2
1857 Female, age 85, left hemisphere 16.0
2290 Female, age 72, unknown 15.6
1854 Male, age 80, left hemisphere 15.4
2846 Female, age 79, unknown 14.4
2288 Male, age 75, left hemisphere 14.3
Claustrum
nTPM: 15.5
2292 Female, age 85, both hemispheres 19.1
2198 Male, age 80, both hemispheres 16.3
2196 Female, age 79, unknown 16.0
2645 Female, age 72, unknown 16.0
2284 Female, age 91, both hemispheres 15.8
2491 Male, age 75, both hemispheres 14.6
1956 Male, age 74, unknown 14.5
2568 Male, age 61, both hemispheres 14.5
2392 Female, age 94, both hemispheres 13.1
Globus pallidus, externus
nTPM: 20.4
1996 Male, age 80, right hemisphere 21.6
2567 Female, age 72, unknown 21.1
2646 Male, age 61, right hemisphere 20.8
2772 Female, age 79, unknown 19.3
2395 Male, age 75, both hemispheres 18.9
Globus pallidus, internus
nTPM: 18.8
2037 Male, age 80, right hemisphere 22.2
2111 Female, age 85, right hemisphere 20.6
2566 Female, age 72, unknown 19.0
1818 Male, age 74, unknown 18.1
2778 Female, age 91, both hemispheres 18.1
2483 Female, age 94, right hemisphere 17.4
2287 Male, age 75, right hemisphere 16.2
Nucleus accumbens
nTPM: 15.1
2732 Male, age 80, right hemisphere 20.0
1806 Female, age 85, left hemisphere 16.8
2698 Female, age 72, unknown 14.8
2286 Male, age 75, left hemisphere 14.6
2391 Female, age 94, left hemisphere 14.4
1783 Male, age 74, unknown 14.2
2824 Male, age 61, right hemisphere 13.8
1856 Female, age 91, right hemisphere 12.1
Nucleus basalis of Meynert
nTPM: 17.2
2569 Male, age 61, both hemispheres 21.4
2821 Male, age 75, both hemispheres 17.7
2484 Female, age 94, left hemisphere 15.0
2393 Male, age 80, right hemisphere 14.6
Nucleus of the diagonal band
nTPM: 14.0
1979 Male, age 74, unknown 15.4
2195 Female, age 85, both hemispheres 13.7
1812 Female, age 91, both hemispheres 13.6
2775 Male, age 80, right hemisphere 13.6
2029 Male, age 61, right hemisphere 13.5
Olfactory tubercle
nTPM: 14.1
2856 Male, age 75, right hemisphere 14.8
2487 Female, age 94, left hemisphere 14.1
1846 Male, age 80, right hemisphere 13.8
1998 Female, age 91, both hemispheres 13.7
Putamen
nTPM: 15.7
2489 Female, age 72, unknown 18.0
2647 Male, age 75, left hemisphere 17.1
2466 Female, age 79, unknown 16.2
1829 Male, age 74, unknown 15.5
2482 Female, age 94, left hemisphere 15.5
1838 Male, age 80, right hemisphere 13.7
1937 Female, age 91, right hemisphere 13.6
Septal nuclei
nTPM: 14.5
2059 Female, age 85, both hemispheres 16.6
2199 Male, age 80, right hemisphere 16.3
2394 Male, age 61, left hemisphere 14.7
2009 Female, age 91, both hemispheres 14.1
1960 Male, age 74, unknown 13.5
2031 Female, age 72, unknown 13.4
2629 Female, age 94, right hemisphere 13.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 22.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 21.8
Samples: 246

Max nTPM: 61.9
Min nTPM: 4.6
Std nTPM: 8.1
Median nTPM: 20.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 61.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 55.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 51.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 47.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 43.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 42.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 41.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 41.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 39.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 38.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 37.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 21.2
Samples: 246

Max nTPM: 71.1
Min nTPM: 7.5
Std nTPM: 10.4
Median nTPM: 18.2
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 71.1
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 66.0
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 62.6
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 62.2
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 59.8
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 57.9
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 57.2
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 47.0
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 45.8
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 41.8
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 40.5
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Brain - Putamen (basal ganglia)
Average nTPM: 22.0
Samples: 205

Max nTPM: 58.1
Min nTPM: 6.6
Std nTPM: 8.1
Median nTPM: 20.6
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 58.1
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 55.6
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 49.9
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 49.3
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 43.9
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 41.9
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 41.2
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 41.0
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 39.8
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 39.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 37.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 8.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 6.8
FF:10164-103B2 76 years, female 6.8
Globus pallidus
Scaled Tags Per Million: 8.6
FF:10161-103A8 76 years, female 11.0
FF:10175-103C4 60 years, female 6.3
Nucleus accumbens
Scaled Tags Per Million: 4.0
FF:10037-101F1 23-56 years, mixed 4.0
Putamen
Scaled Tags Per Million: 6.5
FF:10176-103C5 60 years, female 6.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 3.6
Pig sample Sample description nTPM
Caudate
nTPM: 3.6
Samples: 4

Max nTPM: 4.2
Min nTPM: 2.6
Sample A Female 3.5
Sample B Female 4.1
Sample C Male 4.2
Sample D Male 2.6
Putamen
nTPM: 3.2
Samples: 4

Max nTPM: 4.1
Min nTPM: 2.4
Sample A Female 4.1
Sample B Female 2.4
Sample C Male 3.8
Sample D Male 2.5
Septum
nTPM: 3.0
Samples: 4

Max nTPM: 3.7
Min nTPM: 2.3
Sample A Female 3.7
Sample B Female 2.3
Sample C Male 3.3
Sample D Male 2.7
Ventral pallidum
nTPM: 2.7
Samples: 4

Max nTPM: 3.3
Min nTPM: 2.4
Sample A Female 2.4
Sample B Female 3.3
Sample C Male 2.6
Sample D Male 2.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 5.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 3.4
Samples: 4

Max nTPM: 4.2
Min nTPM: 2.4
Sample A Male 4.0
Sample B Male 4.2
Sample C Female 2.4
Sample D Female 3.0
Septum
nTPM: 5.5
Samples: 4

Max nTPM: 5.9
Min nTPM: 5.0
Sample A Male 5.9
Sample B Male 5.0
Sample C Female 5.5
Sample D Female 5.4
Ventral forebrain
nTPM: 3.9
Samples: 4

Max nTPM: 5.1
Min nTPM: 3.1
Sample A Male 3.8
Sample B Male 3.1
Sample C Female 5.1
Sample D Female 3.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
71991870 Antisense, RP_051012_03_F07, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
71991870 Antisense, RP_051012_03_F07, Mouse strain C57BL/6J (56 days, male) 0.0

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