BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:74.3 nTPM
HPA:74.3 nTPM
GTEx:76.4 nTPM
FANTOM5:45.3 Scaled Tags Per Million

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 74.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 61.7
2288 Male, age 75, left hemisphere 68.0
1781 Male, age 74, unknown 64.1
2846 Female, age 79, unknown 63.6
2481 Female, age 94, left hemisphere 63.5
2290 Female, age 72, unknown 60.8
1857 Female, age 85, left hemisphere 59.1
1854 Male, age 80, left hemisphere 57.9
2289 Male, age 61, right hemisphere 56.3
Claustrum
nTPM: 67.9
2198 Male, age 80, both hemispheres 72.0
2292 Female, age 85, both hemispheres 71.9
2568 Male, age 61, both hemispheres 71.1
2491 Male, age 75, both hemispheres 69.3
1956 Male, age 74, unknown 68.5
2645 Female, age 72, unknown 65.7
2284 Female, age 91, both hemispheres 65.3
2196 Female, age 79, unknown 63.9
2392 Female, age 94, both hemispheres 63.9
Globus pallidus, externus
nTPM: 73.0
2395 Male, age 75, both hemispheres 77.3
2772 Female, age 79, unknown 77.0
1996 Male, age 80, right hemisphere 76.8
2646 Male, age 61, right hemisphere 69.1
2567 Female, age 72, unknown 64.8
Globus pallidus, internus
nTPM: 74.3
2287 Male, age 75, right hemisphere 87.0
2778 Female, age 91, both hemispheres 83.7
2111 Female, age 85, right hemisphere 74.1
2037 Male, age 80, right hemisphere 71.9
1818 Male, age 74, unknown 70.4
2483 Female, age 94, right hemisphere 68.2
2566 Female, age 72, unknown 65.1
Nucleus accumbens
nTPM: 61.1
2286 Male, age 75, left hemisphere 67.6
2391 Female, age 94, left hemisphere 64.9
1806 Female, age 85, left hemisphere 63.4
2698 Female, age 72, unknown 61.5
2732 Male, age 80, right hemisphere 60.8
1783 Male, age 74, unknown 59.8
1856 Female, age 91, right hemisphere 56.6
2824 Male, age 61, right hemisphere 54.3
Nucleus basalis of Meynert
nTPM: 62.0
2569 Male, age 61, both hemispheres 66.2
2821 Male, age 75, both hemispheres 66.2
2484 Female, age 94, left hemisphere 58.0
2393 Male, age 80, right hemisphere 57.6
Nucleus of the diagonal band
nTPM: 63.0
1812 Female, age 91, both hemispheres 66.5
2029 Male, age 61, right hemisphere 65.1
2775 Male, age 80, right hemisphere 65.1
2195 Female, age 85, both hemispheres 63.5
1979 Male, age 74, unknown 54.8
Olfactory tubercle
nTPM: 61.5
1846 Male, age 80, right hemisphere 62.9
1998 Female, age 91, both hemispheres 62.4
2487 Female, age 94, left hemisphere 61.3
2856 Male, age 75, right hemisphere 59.5
Putamen
nTPM: 61.4
2466 Female, age 79, unknown 64.8
1829 Male, age 74, unknown 63.5
2647 Male, age 75, left hemisphere 61.7
2482 Female, age 94, left hemisphere 60.9
1937 Female, age 91, right hemisphere 60.7
2489 Female, age 72, unknown 60.6
1838 Male, age 80, right hemisphere 57.7
Septal nuclei
nTPM: 62.3
1960 Male, age 74, unknown 68.6
2031 Female, age 72, unknown 64.7
2394 Male, age 61, left hemisphere 63.5
2059 Female, age 85, both hemispheres 60.9
2009 Female, age 91, both hemispheres 60.2
2629 Female, age 94, right hemisphere 60.2
2199 Male, age 80, right hemisphere 58.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 76.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 62.4
Samples: 246

Max nTPM: 96.2
Min nTPM: 30.1
Std nTPM: 12.6
Median nTPM: 61.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 96.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 95.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 93.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 93.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 92.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 91.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 89.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 89.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 89.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 87.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 87.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 57.4
Samples: 246

Max nTPM: 113.0
Min nTPM: 27.9
Std nTPM: 13.8
Median nTPM: 56.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 113.0
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 111.6
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 109.5
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 105.6
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 96.5
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 94.2
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 88.9
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 88.5
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 88.4
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 85.7
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 84.0
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Brain - Putamen (basal ganglia)
Average nTPM: 76.4
Samples: 205

Max nTPM: 124.5
Min nTPM: 38.7
Std nTPM: 14.6
Median nTPM: 76.6
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 124.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 117.1
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 116.7
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 115.6
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 110.3
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 109.8
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 109.3
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 105.3
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 104.5
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 104.1
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 99.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 26.1
FF:10164-103B2 76 years, female 26.1
Globus pallidus
Scaled Tags Per Million: 43.3
FF:10175-103C4 60 years, female 43.4
FF:10161-103A8 76 years, female 43.3
Nucleus accumbens
Scaled Tags Per Million: 45.3
FF:10037-101F1 23-56 years, mixed 45.3
Putamen
Scaled Tags Per Million: 33.7
FF:10176-103C5 60 years, female 33.7

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