MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:73.5 nTPM
HPA:73.5 nTPM
GTEx:87.7 nTPM
FANTOM5:53.9 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 73.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 71.0
2411 Female, age 72, unknown 77.4
1870 Female, age 42, unknown 73.3
2666 Male, age 74, left hemisphere 73.2
1827 Male, age 72, unknown 72.0
2019 Male, age 18, unknown 71.2
2828 Female, age 72, unknown 70.9
2586 Male, age 75, left hemisphere 70.2
1833 Male, age 53, unknown 69.4
1830 Male, age 51, unknown 68.9
2219 Male, age 76, both hemispheres 63.8
Dorsal raphe nucleus
nTPM: 68.1
2750 Male, age 76, both hemispheres 73.0
2298 Female, age 72, unknown 72.0
2047 Male, age 72, unknown 67.0
1828 Male, age 53, unknown 66.6
2016 Female, age 72, unknown 61.9
Inferior colliculus
nTPM: 65.3
1848 Female, age 42, unknown 66.9
2097 Female, age 72, unknown 65.6
2849 Male, age 72, unknown 65.3
1890 Male, age 53, unknown 63.2
Median raphe nucleus
nTPM: 68.7
2220 Male, age 76, midline 68.7
Pedunculopontine tegmental nucleus
nTPM: 69.3
2334 Male, age 80, both hemispheres 73.3
2338 Male, age 61, both hemispheres 67.4
1921 Female, age 85, both hemispheres 67.3
Periaquaductal grey, anterior
nTPM: 69.9
1947 Male, age 18, unknown 72.4
1795 Male, age 51, unknown 68.7
2502 Female, age 75, unknown 68.7
Periaquaductal grey, dorsal
nTPM: 61.8
2464 Female, age 72, unknown 63.2
2850 Male, age 76, both hemispheres 62.5
1840 Male, age 53, unknown 61.8
1831 Male, age 72, unknown 59.6
Periaquaductal grey, lateral
nTPM: 62.9
2272 Male, age 74, both hemispheres 64.1
2140 Male, age 76, both hemispheres 62.4
2053 Male, age 18, unknown 62.1
Pretectal area
nTPM: 67.1
2007 Male, age 72, unknown 74.5
1817 Female, age 42, unknown 72.0
1815 Male, age 53, unknown 69.9
2667 Female, age 75, unknown 69.6
1816 Male, age 51, unknown 68.3
2825 Male, age 18, unknown 66.8
1944 Female, age 72, unknown 65.8
2316 Male, age 76, right hemisphere 63.5
2273 Male, age 74, both hemispheres 63.0
2224 Female, age 72, unknown 62.8
2407 Male, age 75, both hemispheres 61.8
Red nucleus
nTPM: 73.5
1821 Female, age 72, unknown 79.4
2769 Male, age 72, unknown 76.5
1865 Male, age 51, unknown 76.4
1904 Male, age 53, unknown 74.7
2227 Male, age 72, unknown 74.3
2725 Female, age 75, unknown 74.3
2503 Female, age 72, unknown 74.1
1954 Female, age 42, unknown 73.1
2785 Male, age 18, unknown 72.7
2588 Male, age 74, left hemisphere 71.4
2823 Male, age 76, right hemisphere 71.4
2584 Male, age 75, left hemisphere 64.2
Substantia nigra
nTPM: 68.7
1916 Female, age 42, unknown 77.4
1851 Male, age 51, unknown 72.9
1941 Male, age 53, unknown 72.0
1889 Female, age 72, unknown 71.3
2409 Female, age 72, unknown 68.0
2583 Male, age 75, right hemisphere 67.6
2699 Male, age 18, unknown 67.0
2590 Female, age 75, unknown 64.5
2665 Male, age 74, both hemispheres 63.6
2241 Male, age 72, unknown 62.8
Superior colliculus
nTPM: 67.2
1796 Male, age 53, unknown 71.3
2587 Male, age 74, left hemisphere 69.6
1913 Female, age 42, unknown 69.5
2668 Female, age 75, unknown 68.7
1895 Male, age 76, right hemisphere 68.1
2261 Male, age 18, unknown 67.4
1839 Male, age 51, unknown 67.2
2087 Female, age 72, unknown 65.6
1995 Male, age 72, unknown 65.5
2664 Male, age 75, both hemispheres 59.6
Ventral tegmental area
nTPM: 71.9
2410 Female, age 72, unknown 81.0
2223 Female, age 72, unknown 76.1
1915 Female, age 42, unknown 72.6
2218 Male, age 76, both hemispheres 70.8
1942 Male, age 51, unknown 66.0
2021 Male, age 53, unknown 64.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 87.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 87.7
Samples: 139

Max nTPM: 163.7
Min nTPM: 43.0
Std nTPM: 19.5
Median nTPM: 86.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 163.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 162.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 156.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 131.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 130.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 121.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 121.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 120.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 117.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 116.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 115.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 53.9
FF:10158-103A5 76 years, female 53.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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