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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:74.3 nTPM
HPA:74.3 nTPM
GTEx:110.6 nTPM
FANTOM5:32.4 Scaled Tags Per Million

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 74.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 69.9
2194 Female, age 79, both hemispheres 74.9
1981 Female, age 72, midline 74.8
2565 Male, age 75, midline 72.6
2816 Male, age 47, midline 67.5
2048 Male, age 55, midline 59.7
Cervical spinal cord, dorsal horn
nTPM: 74.3
2296 Male, age 66, both hemispheres 90.8
2173 Female, age 72, unknown 82.4
2069 Male, age 47, both hemispheres 74.4
1877 Male, age 55, unknown 68.3
2297 Male, age 75, both hemispheres 66.4
2721 Male, age 90, both hemispheres 63.8
Cervical spinal cord, ventral horn
nTPM: 72.9
2480 Male, age 75, both hemispheres 77.0
2068 Male, age 55, unknown 75.0
2820 Female, age 79, both hemispheres 73.3
2098 Female, age 72, unknown 71.8
2295 Male, age 66, both hemispheres 70.6
2809 Male, age 90, both hemispheres 69.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 110.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 110.6
Samples: 159

Max nTPM: 188.3
Min nTPM: 48.1
Std nTPM: 27.3
Median nTPM: 109.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 188.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 186.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 176.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 172.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 166.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 165.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 164.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 161.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 156.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 153.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 153.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 150.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 149.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 147.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 145.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 144.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 144.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 143.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 143.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 143.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 142.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 140.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 137.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 136.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 136.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 134.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 134.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 133.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 132.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 132.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 132.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 131.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 130.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 130.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 130.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 130.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 130.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 129.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 129.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 128.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 128.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 127.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 126.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 126.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 126.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 125.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 124.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 124.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 123.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 123.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 123.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 121.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 121.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 121.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 120.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 120.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 120.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 120.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 119.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 119.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 119.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 118.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 118.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 118.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 117.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 117.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 117.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 117.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 116.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 116.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 116.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 116.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 116.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 113.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 113.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 113.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 113.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 113.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 110.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 109.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 109.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 108.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 107.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 107.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 106.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 106.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 106.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 105.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 103.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 103.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 103.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 102.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 102.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 102.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 102.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 101.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 101.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 101.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 101.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 100.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 99.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 99.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 99.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 99.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 99.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 98.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 97.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 95.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 95.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 94.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 92.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 92.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 92.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 92.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 92.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 92.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 91.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 91.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 90.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 89.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 89.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 89.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 89.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 88.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 88.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 88.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 86.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 86.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 86.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 86.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 86.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 85.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 85.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 85.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 84.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 82.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 82.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 81.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 80.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 79.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 77.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 77.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 76.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 75.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 74.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 72.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 72.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 71.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 70.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 69.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 67.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 66.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 63.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 61.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 61.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 58.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 57.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 56.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 48.1
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 32.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 32.4
FF:10181-103D1 60 years, female 34.2
FF:10159-103A6 76 years, female 30.7

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