MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:66.5 nTPM
HPA:66.5 nTPM
GTEx:334.8 nTPM
FANTOM5:154.1 Scaled Tags Per Million
Pig:109.8 nTPM
Mouse:126.1 nTPM
Allen mouse:1.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 66.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 64.2
2586 Male, age 75, left hemisphere 85.4
2828 Female, age 72, unknown 76.8
2411 Female, age 72, unknown 68.9
1870 Female, age 42, unknown 64.4
1827 Male, age 72, unknown 63.6
1830 Male, age 51, unknown 60.6
1833 Male, age 53, unknown 59.4
2019 Male, age 18, unknown 57.4
2666 Male, age 74, left hemisphere 53.4
2219 Male, age 76, both hemispheres 51.7
Dorsal raphe nucleus
nTPM: 64.9
2298 Female, age 72, unknown 66.7
2750 Male, age 76, both hemispheres 66.1
2047 Male, age 72, unknown 65.4
1828 Male, age 53, unknown 63.7
2016 Female, age 72, unknown 62.6
Inferior colliculus
nTPM: 59.8
2097 Female, age 72, unknown 64.1
1848 Female, age 42, unknown 60.7
1890 Male, age 53, unknown 59.5
2849 Male, age 72, unknown 55.0
Median raphe nucleus
nTPM: 51.8
2220 Male, age 76, midline 51.8
Pedunculopontine tegmental nucleus
nTPM: 53.5
1921 Female, age 85, both hemispheres 59.7
2334 Male, age 80, both hemispheres 57.4
2338 Male, age 61, both hemispheres 43.4
Periaquaductal grey, anterior
nTPM: 61.9
1947 Male, age 18, unknown 63.9
2502 Female, age 75, unknown 61.2
1795 Male, age 51, unknown 60.7
Periaquaductal grey, dorsal
nTPM: 56.5
1840 Male, age 53, unknown 64.2
2464 Female, age 72, unknown 57.1
2850 Male, age 76, both hemispheres 54.0
1831 Male, age 72, unknown 50.7
Periaquaductal grey, lateral
nTPM: 55.0
2053 Male, age 18, unknown 65.7
2140 Male, age 76, both hemispheres 55.1
2272 Male, age 74, both hemispheres 44.1
Pretectal area
nTPM: 61.0
2407 Male, age 75, both hemispheres 73.7
2316 Male, age 76, right hemisphere 65.4
2667 Female, age 75, unknown 64.7
2825 Male, age 18, unknown 64.5
1817 Female, age 42, unknown 60.4
2224 Female, age 72, unknown 60.4
1816 Male, age 51, unknown 59.2
1815 Male, age 53, unknown 59.1
2273 Male, age 74, both hemispheres 57.8
2007 Male, age 72, unknown 54.2
1944 Female, age 72, unknown 51.4
Red nucleus
nTPM: 66.5
2769 Male, age 72, unknown 74.7
1904 Male, age 53, unknown 74.2
2227 Male, age 72, unknown 74.2
1954 Female, age 42, unknown 71.3
1821 Female, age 72, unknown 70.3
2503 Female, age 72, unknown 68.7
2588 Male, age 74, left hemisphere 67.9
1865 Male, age 51, unknown 65.6
2823 Male, age 76, right hemisphere 63.5
2725 Female, age 75, unknown 60.1
2584 Male, age 75, left hemisphere 54.4
2785 Male, age 18, unknown 53.5
Substantia nigra
nTPM: 64.3
2583 Male, age 75, right hemisphere 73.9
1851 Male, age 51, unknown 69.5
1916 Female, age 42, unknown 67.8
2699 Male, age 18, unknown 65.3
2241 Male, age 72, unknown 64.9
2590 Female, age 75, unknown 64.5
2665 Male, age 74, both hemispheres 62.8
1889 Female, age 72, unknown 61.4
2409 Female, age 72, unknown 60.1
1941 Male, age 53, unknown 52.6
Superior colliculus
nTPM: 63.4
2664 Male, age 75, both hemispheres 88.9
1995 Male, age 72, unknown 66.7
2668 Female, age 75, unknown 64.1
1796 Male, age 53, unknown 62.3
2087 Female, age 72, unknown 60.8
2261 Male, age 18, unknown 60.8
2587 Male, age 74, left hemisphere 58.8
1839 Male, age 51, unknown 58.7
1895 Male, age 76, right hemisphere 56.9
1913 Female, age 42, unknown 56.0
Ventral tegmental area
nTPM: 60.1
1915 Female, age 42, unknown 65.5
1942 Male, age 51, unknown 63.6
2021 Male, age 53, unknown 63.5
2410 Female, age 72, unknown 59.1
2218 Male, age 76, both hemispheres 56.7
2223 Female, age 72, unknown 52.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 334.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 334.8
Samples: 139

Max nTPM: 1079.7
Min nTPM: 41.1
Std nTPM: 175.7
Median nTPM: 294.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1079.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 953.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 912.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 840.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 766.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 749.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 721.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 676.8
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 656.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 626.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 596.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 154.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 154.1
FF:10158-103A5 76 years, female 154.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 109.8
Pig sample Sample description nTPM
Midbrain
nTPM: 108.7
Samples: 4

Max nTPM: 124.2
Min nTPM: 97.0
Sample A Female 114.2
Sample B Female 124.2
Sample C Male 99.3
Sample D Male 97.0
Periaqueductal gray
nTPM: 102.4
Samples: 3

Max nTPM: 112.4
Min nTPM: 87.4
Sample B Female 112.4
Sample C Male 107.5
Sample D Male 87.4
Substantia nigra
nTPM: 109.8
Samples: 4

Max nTPM: 139.6
Min nTPM: 77.2
Sample A Female 105.6
Sample B Female 77.2
Sample C Male 116.9
Sample D Male 139.6
Superior colliculi
nTPM: 89.1
Samples: 4

Max nTPM: 109.5
Min nTPM: 42.8
Sample A Female 102.8
Sample B Female 42.8
Sample C Male 101.3
Sample D Male 109.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 126.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 126.1
Samples: 4

Max nTPM: 138.8
Min nTPM: 109.9
Sample A Male 138.8
Sample B Male 109.9
Sample C Female 128.4
Sample D Female 127.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
70919830 Antisense, RP_050713_02_B05, Mouse strain C57BL/6J (56 days, male) 1.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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