MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:322.9 nTPM
HPA:322.9 nTPM
GTEx:343.3 nTPM
FANTOM5:283.6 Scaled Tags Per Million
Pig:305.8 nTPM
Mouse:23.7 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 322.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 236.0
1830 Male, age 51, unknown 295.2
1833 Male, age 53, unknown 291.7
2411 Female, age 72, unknown 274.5
1870 Female, age 42, unknown 265.6
2019 Male, age 18, unknown 252.6
2828 Female, age 72, unknown 238.5
2666 Male, age 74, left hemisphere 202.1
2586 Male, age 75, left hemisphere 192.6
2219 Male, age 76, both hemispheres 181.4
1827 Male, age 72, unknown 165.9
Dorsal raphe nucleus
nTPM: 177.5
2750 Male, age 76, both hemispheres 308.4
2016 Female, age 72, unknown 178.6
1828 Male, age 53, unknown 166.8
2047 Male, age 72, unknown 121.6
2298 Female, age 72, unknown 112.2
Inferior colliculus
nTPM: 168.1
2849 Male, age 72, unknown 194.9
1848 Female, age 42, unknown 172.5
1890 Male, age 53, unknown 170.0
2097 Female, age 72, unknown 135.0
Median raphe nucleus
nTPM: 162.5
2220 Male, age 76, midline 162.5
Pedunculopontine tegmental nucleus
nTPM: 250.6
2338 Male, age 61, both hemispheres 304.0
2334 Male, age 80, both hemispheres 258.6
1921 Female, age 85, both hemispheres 189.0
Periaquaductal grey, anterior
nTPM: 128.0
1947 Male, age 18, unknown 135.4
1795 Male, age 51, unknown 125.9
2502 Female, age 75, unknown 122.6
Periaquaductal grey, dorsal
nTPM: 123.4
2464 Female, age 72, unknown 172.1
1831 Male, age 72, unknown 134.0
2850 Male, age 76, both hemispheres 96.4
1840 Male, age 53, unknown 91.1
Periaquaductal grey, lateral
nTPM: 128.6
2272 Male, age 74, both hemispheres 158.8
2053 Male, age 18, unknown 137.4
2140 Male, age 76, both hemispheres 89.5
Pretectal area
nTPM: 155.8
1815 Male, age 53, unknown 210.9
2316 Male, age 76, right hemisphere 207.3
1817 Female, age 42, unknown 185.9
2407 Male, age 75, both hemispheres 175.5
2007 Male, age 72, unknown 174.0
2825 Male, age 18, unknown 169.6
2273 Male, age 74, both hemispheres 133.7
2224 Female, age 72, unknown 125.0
1944 Female, age 72, unknown 114.8
1816 Male, age 51, unknown 109.3
2667 Female, age 75, unknown 108.1
Red nucleus
nTPM: 322.9
2823 Male, age 76, right hemisphere 413.0
2769 Male, age 72, unknown 358.0
1904 Male, age 53, unknown 356.0
1821 Female, age 72, unknown 351.9
2227 Male, age 72, unknown 348.3
1865 Male, age 51, unknown 338.9
2503 Female, age 72, unknown 318.3
1954 Female, age 42, unknown 313.1
2785 Male, age 18, unknown 303.1
2588 Male, age 74, left hemisphere 281.1
2725 Female, age 75, unknown 276.0
2584 Male, age 75, left hemisphere 217.2
Substantia nigra
nTPM: 168.0
2583 Male, age 75, right hemisphere 221.4
2590 Female, age 75, unknown 212.5
1889 Female, age 72, unknown 195.0
1851 Male, age 51, unknown 184.0
2699 Male, age 18, unknown 174.8
2665 Male, age 74, both hemispheres 146.7
1941 Male, age 53, unknown 144.9
2409 Female, age 72, unknown 143.5
1916 Female, age 42, unknown 142.0
2241 Male, age 72, unknown 115.6
Superior colliculus
nTPM: 200.1
1995 Male, age 72, unknown 281.1
2668 Female, age 75, unknown 259.2
1913 Female, age 42, unknown 251.1
1895 Male, age 76, right hemisphere 230.0
2587 Male, age 74, left hemisphere 216.6
1839 Male, age 51, unknown 208.0
1796 Male, age 53, unknown 165.1
2664 Male, age 75, both hemispheres 134.8
2087 Female, age 72, unknown 130.4
2261 Male, age 18, unknown 124.8
Ventral tegmental area
nTPM: 193.7
2223 Female, age 72, unknown 259.5
2410 Female, age 72, unknown 214.1
2218 Male, age 76, both hemispheres 179.9
1942 Male, age 51, unknown 171.3
2021 Male, age 53, unknown 171.0
1915 Female, age 42, unknown 166.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 343.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 343.3
Samples: 139

Max nTPM: 1391.6
Min nTPM: 63.1
Std nTPM: 232.5
Median nTPM: 269.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1391.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1372.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1272.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1140.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1109.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 721.7
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 701.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 666.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 659.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 655.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 619.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 283.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 283.6
FF:10158-103A5 76 years, female 283.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 305.8
Pig sample Sample description nTPM
Midbrain
nTPM: 305.8
Samples: 4

Max nTPM: 630.4
Min nTPM: 127.6
Sample A Female 630.4
Sample B Female 309.3
Sample C Male 127.6
Sample D Male 155.7
Periaqueductal gray
nTPM: 213.1
Samples: 3

Max nTPM: 254.2
Min nTPM: 171.2
Sample B Female 254.2
Sample C Male 171.2
Sample D Male 214.0
Substantia nigra
nTPM: 277.4
Samples: 4

Max nTPM: 420.4
Min nTPM: 157.3
Sample A Female 327.8
Sample B Female 204.1
Sample C Male 157.3
Sample D Male 420.4
Superior colliculi
nTPM: 220.9
Samples: 4

Max nTPM: 298.5
Min nTPM: 126.7
Sample A Female 298.5
Sample B Female 126.7
Sample C Male 192.5
Sample D Male 265.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 23.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.7
Samples: 4

Max nTPM: 29.7
Min nTPM: 18.4
Sample A Male 29.7
Sample B Male 18.4
Sample C Female 22.8
Sample D Female 23.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
70546384 Antisense, RP_050623_04_C01, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.