BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:57.3 nTPM
HPA:57.3 nTPM
GTEx:55.6 nTPM
FANTOM5:63.0 Scaled Tags Per Million
Pig:8.5 nTPM
Mouse:32.2 nTPM
Allen mouse:1.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA011101Antibody CAB018969
Glial cells MediumLow
Neuronal cells LowMedium





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 57.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 45.5
2288 Male, age 75, left hemisphere 50.6
2846 Female, age 79, unknown 48.1
1781 Male, age 74, unknown 47.9
1857 Female, age 85, left hemisphere 46.1
1854 Male, age 80, left hemisphere 44.8
2290 Female, age 72, unknown 43.2
2481 Female, age 94, left hemisphere 41.9
2289 Male, age 61, right hemisphere 41.5
Claustrum
nTPM: 56.7
2568 Male, age 61, both hemispheres 62.3
2198 Male, age 80, both hemispheres 59.9
1956 Male, age 74, unknown 57.4
2284 Female, age 91, both hemispheres 57.2
2292 Female, age 85, both hemispheres 56.6
2392 Female, age 94, both hemispheres 56.0
2196 Female, age 79, unknown 55.5
2645 Female, age 72, unknown 53.3
2491 Male, age 75, both hemispheres 52.4
Globus pallidus, externus
nTPM: 45.6
2772 Female, age 79, unknown 48.6
2395 Male, age 75, both hemispheres 47.6
2646 Male, age 61, right hemisphere 45.7
2567 Female, age 72, unknown 45.1
1996 Male, age 80, right hemisphere 40.9
Globus pallidus, internus
nTPM: 42.7
2287 Male, age 75, right hemisphere 49.3
2037 Male, age 80, right hemisphere 43.6
2566 Female, age 72, unknown 43.3
1818 Male, age 74, unknown 43.1
2778 Female, age 91, both hemispheres 41.7
2483 Female, age 94, right hemisphere 39.6
2111 Female, age 85, right hemisphere 38.0
Nucleus accumbens
nTPM: 48.7
1856 Female, age 91, right hemisphere 53.9
2286 Male, age 75, left hemisphere 50.1
1783 Male, age 74, unknown 50.0
2824 Male, age 61, right hemisphere 47.7
1806 Female, age 85, left hemisphere 47.6
2732 Male, age 80, right hemisphere 47.4
2391 Female, age 94, left hemisphere 47.0
2698 Female, age 72, unknown 46.0
Nucleus basalis of Meynert
nTPM: 44.4
2821 Male, age 75, both hemispheres 49.0
2484 Female, age 94, left hemisphere 43.6
2393 Male, age 80, right hemisphere 42.8
2569 Male, age 61, both hemispheres 41.9
Nucleus of the diagonal band
nTPM: 57.3
2775 Male, age 80, right hemisphere 62.0
1812 Female, age 91, both hemispheres 58.2
2195 Female, age 85, both hemispheres 57.7
2029 Male, age 61, right hemisphere 57.3
1979 Male, age 74, unknown 51.3
Olfactory tubercle
nTPM: 55.9
1998 Female, age 91, both hemispheres 62.3
2487 Female, age 94, left hemisphere 56.7
1846 Male, age 80, right hemisphere 56.6
2856 Male, age 75, right hemisphere 48.2
Putamen
nTPM: 46.3
2466 Female, age 79, unknown 51.2
1937 Female, age 91, right hemisphere 51.1
2647 Male, age 75, left hemisphere 46.9
1838 Male, age 80, right hemisphere 45.9
2489 Female, age 72, unknown 43.6
2482 Female, age 94, left hemisphere 43.4
1829 Male, age 74, unknown 41.7
Septal nuclei
nTPM: 54.1
2031 Female, age 72, unknown 63.6
1960 Male, age 74, unknown 63.5
2009 Female, age 91, both hemispheres 56.3
2629 Female, age 94, right hemisphere 50.6
2394 Male, age 61, left hemisphere 50.3
2059 Female, age 85, both hemispheres 48.9
2199 Male, age 80, right hemisphere 45.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 55.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 43.4
Samples: 246

Max nTPM: 99.7
Min nTPM: 14.7
Std nTPM: 14.8
Median nTPM: 43.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 99.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 86.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 84.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 76.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 74.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 74.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 73.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 73.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 71.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 71.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 71.1
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 55.6
Samples: 246

Max nTPM: 259.1
Min nTPM: 13.1
Std nTPM: 23.1
Median nTPM: 55.5
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 259.1
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 113.8
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 101.7
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 97.0
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 96.1
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 96.1
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 94.8
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 94.8
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 93.9
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 93.2
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 90.2
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 43.1
Samples: 205

Max nTPM: 96.8
Min nTPM: 16.4
Std nTPM: 15.2
Median nTPM: 42.0
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 96.8
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 83.5
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 78.4
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 76.6
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 76.3
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 75.8
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 73.6
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 73.5
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 70.0
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 69.7
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 69.3
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 63.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 39.3
FF:10164-103B2 76 years, female 39.3
Globus pallidus
Scaled Tags Per Million: 16.5
FF:10175-103C4 60 years, female 22.8
FF:10161-103A8 76 years, female 10.2
Nucleus accumbens
Scaled Tags Per Million: 54.8
FF:10037-101F1 23-56 years, mixed 54.8
Putamen
Scaled Tags Per Million: 63.0
FF:10176-103C5 60 years, female 63.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 8.5
Pig sample Sample description nTPM
Caudate
nTPM: 3.8
Samples: 4

Max nTPM: 5.1
Min nTPM: 2.6
Sample A Female 5.1
Sample B Female 4.0
Sample C Male 3.6
Sample D Male 2.6
Putamen
nTPM: 4.1
Samples: 4

Max nTPM: 6.9
Min nTPM: 2.5
Sample A Female 6.9
Sample B Female 2.5
Sample C Male 3.1
Sample D Male 3.8
Septum
nTPM: 8.5
Samples: 4

Max nTPM: 11.0
Min nTPM: 4.9
Sample A Female 7.7
Sample B Female 4.9
Sample C Male 11.0
Sample D Male 10.2
Ventral pallidum
nTPM: 4.4
Samples: 4

Max nTPM: 6.1
Min nTPM: 3.6
Sample A Female 3.8
Sample B Female 3.9
Sample C Male 6.1
Sample D Male 3.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 32.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 17.8
Samples: 4

Max nTPM: 27.1
Min nTPM: 11.8
Sample A Male 27.1
Sample B Male 18.9
Sample C Female 11.8
Sample D Female 13.2
Septum
nTPM: 32.3
Samples: 4

Max nTPM: 34.1
Min nTPM: 30.4
Sample A Male 33.8
Sample B Male 30.4
Sample C Female 34.1
Sample D Female 30.7
Ventral forebrain
nTPM: 20.9
Samples: 4

Max nTPM: 26.1
Min nTPM: 13.3
Sample A Male 20.2
Sample B Male 26.1
Sample C Female 23.9
Sample D Female 13.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.6
74047774 Antisense, RP_051214_01_H11, Mouse strain C57BL/6J (56 days, male) 1.7
70565264 Antisense, RP_050623_04_F02, Mouse strain C57BL/6J (56 days, male) 1.4
Pallidum
Expression energy: 1.4
70565264 Antisense, RP_050623_04_F02, Mouse strain C57BL/6J (56 days, male) 2.2
74047774 Antisense, RP_051214_01_H11, Mouse strain C57BL/6J (56 days, male) 0.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.