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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:35.7 nTPM
HPA:35.7 nTPM
GTEx:16.2 nTPM
FANTOM5:3.4 Scaled Tags Per Million
Pig:2.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 35.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 31.6
2194 Female, age 79, both hemispheres 34.0
2565 Male, age 75, midline 32.0
2816 Male, age 47, midline 31.5
1981 Female, age 72, midline 30.4
2048 Male, age 55, midline 30.3
Cervical spinal cord, dorsal horn
nTPM: 35.7
2721 Male, age 90, both hemispheres 45.9
2297 Male, age 75, both hemispheres 43.7
1877 Male, age 55, unknown 35.9
2069 Male, age 47, both hemispheres 33.4
2296 Male, age 66, both hemispheres 28.6
2173 Female, age 72, unknown 26.9
Cervical spinal cord, ventral horn
nTPM: 31.1
2820 Female, age 79, both hemispheres 34.4
2068 Male, age 55, unknown 33.0
2295 Male, age 66, both hemispheres 32.4
2480 Male, age 75, both hemispheres 30.6
2809 Male, age 90, both hemispheres 28.7
2098 Female, age 72, unknown 27.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 16.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 16.2
Samples: 159

Max nTPM: 73.0
Min nTPM: 3.6
Std nTPM: 10.2
Median nTPM: 13.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 73.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 54.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 52.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 50.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 48.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 40.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 39.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 38.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 33.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 33.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 30.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 30.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 29.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 29.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 29.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 27.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 27.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 27.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 26.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 26.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 26.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 26.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 25.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 25.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 23.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 23.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 23.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 23.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 23.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 23.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 22.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 22.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 21.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 21.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 21.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 20.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 20.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 19.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 18.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 18.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 18.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 18.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 18.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 18.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 17.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 16.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 16.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 16.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 16.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 16.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 16.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 15.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 15.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 15.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 15.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 15.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 14.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 14.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 14.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 14.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 14.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 14.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 14.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 14.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 14.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 14.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 14.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 14.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 14.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 14.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 14.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 13.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 13.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 13.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 13.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 13.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 13.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 13.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 13.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 13.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 13.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 13.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 13.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 13.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 13.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 13.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 13.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 12.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 12.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 12.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 12.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 12.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 12.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 12.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 12.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 12.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 12.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 12.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 12.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 12.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 12.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 11.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 11.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 11.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 11.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 11.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 11.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 11.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 11.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 10.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 10.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 10.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 10.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 10.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 10.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 9.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 9.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 9.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 9.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 9.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 9.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 9.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 8.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 8.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 8.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 8.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 8.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 8.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 8.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 8.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 8.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 8.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 8.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 8.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 8.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 8.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 8.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 8.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 8.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 8.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 7.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 7.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 7.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 7.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 7.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 7.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 7.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 7.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 6.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 6.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 6.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 6.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 6.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 6.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 6.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 5.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 5.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 4.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 3.6
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 3.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 3.4
FF:10159-103A6 76 years, female 5.1
FF:10181-103D1 60 years, female 1.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 2.4
Samples: 4

Max nTPM: 3.7
Min nTPM: 1.1
Sample A Female 3.7
Sample B Female 1.8
Sample C Male 1.1
Sample D Male 2.8
Ventral spinal cord
nTPM: 1.7
Samples: 4

Max nTPM: 2.1
Min nTPM: 1.3
Sample A Female 1.5
Sample B Female 2.1
Sample C Male 1.3
Sample D Male 1.8

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