MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:55.1 nTPM
HPA:55.1 nTPM
GTEx:56.1 nTPM
FANTOM5:46.5 Scaled Tags Per Million
Pig:82.2 nTPM
Mouse:110.5 nTPM
Allen mouse:11.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 55.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 49.9
2586 Male, age 75, left hemisphere 63.4
2666 Male, age 74, left hemisphere 62.6
1827 Male, age 72, unknown 60.8
2411 Female, age 72, unknown 51.1
1870 Female, age 42, unknown 47.3
2828 Female, age 72, unknown 45.7
1833 Male, age 53, unknown 44.4
2219 Male, age 76, both hemispheres 42.2
1830 Male, age 51, unknown 40.8
2019 Male, age 18, unknown 40.7
Dorsal raphe nucleus
nTPM: 44.6
2298 Female, age 72, unknown 51.0
2047 Male, age 72, unknown 46.6
1828 Male, age 53, unknown 44.4
2016 Female, age 72, unknown 41.3
2750 Male, age 76, both hemispheres 39.9
Inferior colliculus
nTPM: 55.1
2849 Male, age 72, unknown 61.6
2097 Female, age 72, unknown 55.9
1848 Female, age 42, unknown 54.5
1890 Male, age 53, unknown 48.5
Median raphe nucleus
nTPM: 49.9
2220 Male, age 76, midline 49.9
Pedunculopontine tegmental nucleus
nTPM: 45.1
1921 Female, age 85, both hemispheres 49.9
2334 Male, age 80, both hemispheres 47.4
2338 Male, age 61, both hemispheres 38.0
Periaquaductal grey, anterior
nTPM: 53.0
2502 Female, age 75, unknown 55.6
1947 Male, age 18, unknown 52.1
1795 Male, age 51, unknown 51.2
Periaquaductal grey, dorsal
nTPM: 49.4
1840 Male, age 53, unknown 59.1
2464 Female, age 72, unknown 50.9
2850 Male, age 76, both hemispheres 44.0
1831 Male, age 72, unknown 43.5
Periaquaductal grey, lateral
nTPM: 41.7
2053 Male, age 18, unknown 45.2
2140 Male, age 76, both hemispheres 44.4
2272 Male, age 74, both hemispheres 35.4
Pretectal area
nTPM: 46.9
1816 Male, age 51, unknown 55.5
2007 Male, age 72, unknown 53.9
2825 Male, age 18, unknown 52.1
1817 Female, age 42, unknown 50.0
1944 Female, age 72, unknown 49.4
2224 Female, age 72, unknown 47.4
2667 Female, age 75, unknown 45.2
1815 Male, age 53, unknown 44.9
2407 Male, age 75, both hemispheres 44.8
2316 Male, age 76, right hemisphere 39.1
2273 Male, age 74, both hemispheres 33.5
Red nucleus
nTPM: 39.7
2584 Male, age 75, left hemisphere 54.5
2725 Female, age 75, unknown 44.4
1821 Female, age 72, unknown 43.2
2588 Male, age 74, left hemisphere 42.5
2769 Male, age 72, unknown 40.1
2785 Male, age 18, unknown 39.8
2227 Male, age 72, unknown 39.7
1954 Female, age 42, unknown 38.6
2503 Female, age 72, unknown 36.2
2823 Male, age 76, right hemisphere 32.7
1904 Male, age 53, unknown 32.5
1865 Male, age 51, unknown 32.3
Substantia nigra
nTPM: 47.5
1941 Male, age 53, unknown 57.5
1916 Female, age 42, unknown 56.5
1851 Male, age 51, unknown 50.4
2583 Male, age 75, right hemisphere 48.8
2665 Male, age 74, both hemispheres 48.8
1889 Female, age 72, unknown 48.5
2241 Male, age 72, unknown 45.9
2699 Male, age 18, unknown 42.3
2590 Female, age 75, unknown 40.2
2409 Female, age 72, unknown 35.9
Superior colliculus
nTPM: 46.1
2664 Male, age 75, both hemispheres 58.4
1796 Male, age 53, unknown 54.6
1839 Male, age 51, unknown 53.0
2261 Male, age 18, unknown 49.7
1895 Male, age 76, right hemisphere 49.1
2087 Female, age 72, unknown 46.0
2668 Female, age 75, unknown 45.8
2587 Male, age 74, left hemisphere 42.6
1913 Female, age 42, unknown 32.0
1995 Male, age 72, unknown 30.1
Ventral tegmental area
nTPM: 46.7
1915 Female, age 42, unknown 54.4
2218 Male, age 76, both hemispheres 47.9
1942 Male, age 51, unknown 46.9
2410 Female, age 72, unknown 45.6
2223 Female, age 72, unknown 44.1
2021 Male, age 53, unknown 41.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 56.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 56.1
Samples: 139

Max nTPM: 169.8
Min nTPM: 26.8
Std nTPM: 23.0
Median nTPM: 48.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 169.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 137.9
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 117.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 115.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 108.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 102.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 100.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 99.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 98.4
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 97.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 94.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 46.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 46.5
FF:10158-103A5 76 years, female 46.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 82.2
Pig sample Sample description nTPM
Midbrain
nTPM: 74.9
Samples: 4

Max nTPM: 94.7
Min nTPM: 51.5
Sample A Female 51.5
Sample B Female 75.2
Sample C Male 78.3
Sample D Male 94.7
Periaqueductal gray
nTPM: 67.9
Samples: 3

Max nTPM: 81.9
Min nTPM: 58.3
Sample B Female 63.6
Sample C Male 81.9
Sample D Male 58.3
Substantia nigra
nTPM: 70.3
Samples: 4

Max nTPM: 94.3
Min nTPM: 39.5
Sample A Female 94.3
Sample B Female 54.9
Sample C Male 92.5
Sample D Male 39.5
Superior colliculi
nTPM: 82.2
Samples: 4

Max nTPM: 103.8
Min nTPM: 67.9
Sample A Female 103.8
Sample B Female 67.9
Sample C Male 71.4
Sample D Male 85.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 110.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 110.5
Samples: 4

Max nTPM: 112.6
Min nTPM: 109.2
Sample A Male 110.3
Sample B Male 109.2
Sample C Female 109.7
Sample D Female 112.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.5
69528112 Antisense, RP_050421_03_B05, Mouse strain C57BL/6J (56 days, male) 11.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.