MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:89.3 nTPM
HPA:89.3 nTPM
GTEx:48.6 nTPM
FANTOM5:77.4 Scaled Tags Per Million
Pig:26.6 nTPM
Mouse:9.2 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 89.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 85.0
2828 Female, age 72, unknown 89.4
1870 Female, age 42, unknown 87.3
1830 Male, age 51, unknown 86.4
2019 Male, age 18, unknown 85.7
2666 Male, age 74, left hemisphere 84.9
2219 Male, age 76, both hemispheres 84.1
1833 Male, age 53, unknown 83.7
1827 Male, age 72, unknown 83.2
2586 Male, age 75, left hemisphere 82.9
2411 Female, age 72, unknown 81.9
Dorsal raphe nucleus
nTPM: 83.8
1828 Male, age 53, unknown 85.7
2750 Male, age 76, both hemispheres 84.4
2016 Female, age 72, unknown 83.7
2047 Male, age 72, unknown 83.5
2298 Female, age 72, unknown 81.4
Inferior colliculus
nTPM: 81.1
2849 Male, age 72, unknown 82.8
1848 Female, age 42, unknown 80.7
2097 Female, age 72, unknown 80.5
1890 Male, age 53, unknown 80.2
Median raphe nucleus
nTPM: 89.3
2220 Male, age 76, midline 89.3
Pedunculopontine tegmental nucleus
nTPM: 84.7
2334 Male, age 80, both hemispheres 88.6
2338 Male, age 61, both hemispheres 84.9
1921 Female, age 85, both hemispheres 80.6
Periaquaductal grey, anterior
nTPM: 82.3
2502 Female, age 75, unknown 85.8
1795 Male, age 51, unknown 82.0
1947 Male, age 18, unknown 79.1
Periaquaductal grey, dorsal
nTPM: 84.5
2850 Male, age 76, both hemispheres 95.2
1831 Male, age 72, unknown 82.7
2464 Female, age 72, unknown 81.1
1840 Male, age 53, unknown 79.1
Periaquaductal grey, lateral
nTPM: 84.0
2140 Male, age 76, both hemispheres 87.6
2272 Male, age 74, both hemispheres 82.6
2053 Male, age 18, unknown 81.7
Pretectal area
nTPM: 84.0
2667 Female, age 75, unknown 89.1
1817 Female, age 42, unknown 86.8
1815 Male, age 53, unknown 86.5
2007 Male, age 72, unknown 84.6
2273 Male, age 74, both hemispheres 84.0
2224 Female, age 72, unknown 83.3
2825 Male, age 18, unknown 83.1
1944 Female, age 72, unknown 83.0
2407 Male, age 75, both hemispheres 81.9
1816 Male, age 51, unknown 81.8
2316 Male, age 76, right hemisphere 80.0
Red nucleus
nTPM: 86.5
2785 Male, age 18, unknown 90.6
1904 Male, age 53, unknown 89.8
1865 Male, age 51, unknown 88.7
2769 Male, age 72, unknown 88.4
2503 Female, age 72, unknown 87.2
1954 Female, age 42, unknown 86.9
2588 Male, age 74, left hemisphere 86.9
2227 Male, age 72, unknown 86.4
2584 Male, age 75, left hemisphere 86.2
1821 Female, age 72, unknown 84.1
2725 Female, age 75, unknown 82.5
2823 Male, age 76, right hemisphere 80.8
Substantia nigra
nTPM: 83.8
1916 Female, age 42, unknown 87.4
2699 Male, age 18, unknown 86.6
1941 Male, age 53, unknown 86.2
2665 Male, age 74, both hemispheres 85.9
2583 Male, age 75, right hemisphere 85.3
1851 Male, age 51, unknown 84.1
1889 Female, age 72, unknown 83.7
2409 Female, age 72, unknown 82.1
2590 Female, age 75, unknown 79.9
2241 Male, age 72, unknown 77.1
Superior colliculus
nTPM: 83.0
1995 Male, age 72, unknown 89.5
1913 Female, age 42, unknown 88.0
2587 Male, age 74, left hemisphere 83.2
1796 Male, age 53, unknown 82.6
2087 Female, age 72, unknown 82.6
2668 Female, age 75, unknown 82.4
2261 Male, age 18, unknown 82.2
1839 Male, age 51, unknown 82.1
2664 Male, age 75, both hemispheres 79.0
1895 Male, age 76, right hemisphere 78.4
Ventral tegmental area
nTPM: 84.3
2223 Female, age 72, unknown 87.5
2218 Male, age 76, both hemispheres 84.5
2410 Female, age 72, unknown 84.5
1915 Female, age 42, unknown 83.9
1942 Male, age 51, unknown 83.3
2021 Male, age 53, unknown 82.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 48.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 48.6
Samples: 139

Max nTPM: 146.6
Min nTPM: 13.0
Std nTPM: 22.5
Median nTPM: 44.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 146.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 136.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 129.6
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 108.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 107.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 104.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 102.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 97.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 94.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 90.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 87.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 77.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 77.4
FF:10158-103A5 76 years, female 77.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 26.6
Pig sample Sample description nTPM
Midbrain
nTPM: 25.8
Samples: 4

Max nTPM: 42.8
Min nTPM: 18.0
Sample A Female 42.8
Sample B Female 21.5
Sample C Male 21.0
Sample D Male 18.0
Periaqueductal gray
nTPM: 22.7
Samples: 3

Max nTPM: 24.8
Min nTPM: 20.0
Sample B Female 20.0
Sample C Male 23.4
Sample D Male 24.8
Substantia nigra
nTPM: 24.5
Samples: 4

Max nTPM: 28.4
Min nTPM: 22.9
Sample A Female 28.4
Sample B Female 23.4
Sample C Male 23.2
Sample D Male 22.9
Superior colliculi
nTPM: 26.6
Samples: 4

Max nTPM: 29.4
Min nTPM: 23.1
Sample A Female 29.4
Sample B Female 27.4
Sample C Male 23.1
Sample D Male 26.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.2
Samples: 4

Max nTPM: 10.6
Min nTPM: 7.7
Sample A Male 10.6
Sample B Male 7.7
Sample C Female 8.0
Sample D Female 10.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68498974 Antisense, RP_050113_02_G02, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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