MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:22.7 nTPM
HPA:22.7 nTPM
GTEx:25.6 nTPM
FANTOM5:89.7 Scaled Tags Per Million
Pig:28.9 nTPM
Mouse:42.7 nTPM
Allen mouse:3.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 22.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.7
2219 Male, age 76, both hemispheres 29.1
2411 Female, age 72, unknown 26.6
1833 Male, age 53, unknown 23.1
1830 Male, age 51, unknown 22.2
2666 Male, age 74, left hemisphere 20.3
2828 Female, age 72, unknown 18.2
2586 Male, age 75, left hemisphere 18.1
1827 Male, age 72, unknown 17.4
1870 Female, age 42, unknown 17.2
2019 Male, age 18, unknown 14.8
Dorsal raphe nucleus
nTPM: 16.1
2750 Male, age 76, both hemispheres 27.2
2047 Male, age 72, unknown 15.7
1828 Male, age 53, unknown 14.1
2298 Female, age 72, unknown 12.3
2016 Female, age 72, unknown 11.2
Inferior colliculus
nTPM: 13.7
2849 Male, age 72, unknown 17.5
1848 Female, age 42, unknown 13.5
1890 Male, age 53, unknown 13.1
2097 Female, age 72, unknown 10.9
Median raphe nucleus
nTPM: 18.6
2220 Male, age 76, midline 18.6
Pedunculopontine tegmental nucleus
nTPM: 18.5
1921 Female, age 85, both hemispheres 21.8
2334 Male, age 80, both hemispheres 20.5
2338 Male, age 61, both hemispheres 13.4
Periaquaductal grey, anterior
nTPM: 18.3
1947 Male, age 18, unknown 20.1
2502 Female, age 75, unknown 18.9
1795 Male, age 51, unknown 16.1
Periaquaductal grey, dorsal
nTPM: 12.6
2464 Female, age 72, unknown 19.4
1831 Male, age 72, unknown 12.1
1840 Male, age 53, unknown 11.5
2850 Male, age 76, both hemispheres 7.5
Periaquaductal grey, lateral
nTPM: 12.9
2053 Male, age 18, unknown 16.0
2272 Male, age 74, both hemispheres 14.8
2140 Male, age 76, both hemispheres 7.8
Pretectal area
nTPM: 15.1
2316 Male, age 76, right hemisphere 18.6
2825 Male, age 18, unknown 18.3
2407 Male, age 75, both hemispheres 17.8
1815 Male, age 53, unknown 16.0
2007 Male, age 72, unknown 15.9
2667 Female, age 75, unknown 15.7
1816 Male, age 51, unknown 14.8
2224 Female, age 72, unknown 14.2
1944 Female, age 72, unknown 13.0
1817 Female, age 42, unknown 12.7
2273 Male, age 74, both hemispheres 9.2
Red nucleus
nTPM: 22.7
2823 Male, age 76, right hemisphere 38.1
2588 Male, age 74, left hemisphere 32.0
1904 Male, age 53, unknown 24.4
2503 Female, age 72, unknown 23.5
1865 Male, age 51, unknown 22.5
2769 Male, age 72, unknown 22.2
2227 Male, age 72, unknown 22.0
2584 Male, age 75, left hemisphere 21.7
1821 Female, age 72, unknown 17.8
2785 Male, age 18, unknown 17.0
1954 Female, age 42, unknown 16.0
2725 Female, age 75, unknown 15.6
Substantia nigra
nTPM: 17.3
1916 Female, age 42, unknown 21.9
1851 Male, age 51, unknown 20.6
2590 Female, age 75, unknown 20.3
2409 Female, age 72, unknown 18.4
2699 Male, age 18, unknown 17.8
1941 Male, age 53, unknown 17.1
2583 Male, age 75, right hemisphere 15.8
2241 Male, age 72, unknown 15.3
1889 Female, age 72, unknown 15.2
2665 Male, age 74, both hemispheres 10.9
Superior colliculus
nTPM: 16.8
1895 Male, age 76, right hemisphere 23.9
2668 Female, age 75, unknown 18.4
2261 Male, age 18, unknown 17.4
1796 Male, age 53, unknown 16.9
1995 Male, age 72, unknown 16.4
1913 Female, age 42, unknown 16.3
1839 Male, age 51, unknown 15.5
2587 Male, age 74, left hemisphere 15.1
2087 Female, age 72, unknown 14.9
2664 Male, age 75, both hemispheres 13.4
Ventral tegmental area
nTPM: 18.6
2410 Female, age 72, unknown 26.6
2218 Male, age 76, both hemispheres 18.7
1915 Female, age 42, unknown 17.0
1942 Male, age 51, unknown 16.9
2223 Female, age 72, unknown 16.6
2021 Male, age 53, unknown 16.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.6
Samples: 139

Max nTPM: 66.4
Min nTPM: 5.1
Std nTPM: 12.1
Median nTPM: 24.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 66.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 59.8
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 58.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 54.7
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 48.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 48.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 48.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 46.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 43.0
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 42.9
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 42.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 89.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 89.7
FF:10158-103A5 76 years, female 89.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 28.9
Pig sample Sample description nTPM
Midbrain
nTPM: 25.0
Samples: 4

Max nTPM: 39.9
Min nTPM: 15.7
Sample A Female 15.7
Sample B Female 20.1
Sample C Male 39.9
Sample D Male 24.4
Periaqueductal gray
nTPM: 17.6
Samples: 3

Max nTPM: 18.9
Min nTPM: 15.4
Sample B Female 15.4
Sample C Male 18.5
Sample D Male 18.9
Substantia nigra
nTPM: 28.9
Samples: 4

Max nTPM: 40.0
Min nTPM: 17.7
Sample A Female 36.7
Sample B Female 21.1
Sample C Male 40.0
Sample D Male 17.7
Superior colliculi
nTPM: 22.5
Samples: 4

Max nTPM: 29.5
Min nTPM: 16.0
Sample A Female 20.8
Sample B Female 16.0
Sample C Male 29.5
Sample D Male 23.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 42.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 42.7
Samples: 4

Max nTPM: 45.3
Min nTPM: 39.7
Sample A Male 42.4
Sample B Male 39.7
Sample C Female 45.3
Sample D Female 43.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.2
532674 Antisense, RP_040825_01_C09, Mouse strain C57BL/6J (56 days, male) 3.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.