MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:37.8 nTPM
HPA:37.8 nTPM
GTEx:59.9 nTPM
FANTOM5:48.8 Scaled Tags Per Million
Mouse:33.1 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 37.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.6
2586 Male, age 75, left hemisphere 40.9
2019 Male, age 18, unknown 39.8
2828 Female, age 72, unknown 37.2
1870 Female, age 42, unknown 37.0
2411 Female, age 72, unknown 36.6
1827 Male, age 72, unknown 34.1
1833 Male, age 53, unknown 33.7
1830 Male, age 51, unknown 33.5
2666 Male, age 74, left hemisphere 32.0
2219 Male, age 76, both hemispheres 30.9
Dorsal raphe nucleus
nTPM: 36.5
2016 Female, age 72, unknown 38.4
2298 Female, age 72, unknown 37.9
1828 Male, age 53, unknown 36.1
2047 Male, age 72, unknown 35.2
2750 Male, age 76, both hemispheres 35.0
Inferior colliculus
nTPM: 36.3
1890 Male, age 53, unknown 39.8
2097 Female, age 72, unknown 39.6
1848 Female, age 42, unknown 33.9
2849 Male, age 72, unknown 31.8
Median raphe nucleus
nTPM: 31.0
2220 Male, age 76, midline 31.0
Pedunculopontine tegmental nucleus
nTPM: 31.8
1921 Female, age 85, both hemispheres 35.4
2334 Male, age 80, both hemispheres 31.3
2338 Male, age 61, both hemispheres 28.9
Periaquaductal grey, anterior
nTPM: 35.9
2502 Female, age 75, unknown 39.0
1795 Male, age 51, unknown 34.9
1947 Male, age 18, unknown 33.8
Periaquaductal grey, dorsal
nTPM: 33.7
1840 Male, age 53, unknown 35.6
2464 Female, age 72, unknown 33.9
1831 Male, age 72, unknown 33.3
2850 Male, age 76, both hemispheres 32.1
Periaquaductal grey, lateral
nTPM: 34.0
2140 Male, age 76, both hemispheres 35.3
2272 Male, age 74, both hemispheres 34.0
2053 Male, age 18, unknown 32.7
Pretectal area
nTPM: 35.1
2007 Male, age 72, unknown 38.9
1944 Female, age 72, unknown 37.7
1817 Female, age 42, unknown 37.1
1816 Male, age 51, unknown 35.9
2273 Male, age 74, both hemispheres 35.3
2316 Male, age 76, right hemisphere 35.1
1815 Male, age 53, unknown 34.8
2667 Female, age 75, unknown 34.7
2224 Female, age 72, unknown 32.9
2825 Male, age 18, unknown 31.6
2407 Male, age 75, both hemispheres 31.5
Red nucleus
nTPM: 37.8
2503 Female, age 72, unknown 42.2
2785 Male, age 18, unknown 41.6
2769 Male, age 72, unknown 41.1
2227 Male, age 72, unknown 40.4
1904 Male, age 53, unknown 38.3
1954 Female, age 42, unknown 38.2
2588 Male, age 74, left hemisphere 38.1
1821 Female, age 72, unknown 36.1
1865 Male, age 51, unknown 35.2
2725 Female, age 75, unknown 34.4
2584 Male, age 75, left hemisphere 34.2
2823 Male, age 76, right hemisphere 33.5
Substantia nigra
nTPM: 33.5
1889 Female, age 72, unknown 36.4
1851 Male, age 51, unknown 35.9
1916 Female, age 42, unknown 35.5
2583 Male, age 75, right hemisphere 34.3
2409 Female, age 72, unknown 33.7
2665 Male, age 74, both hemispheres 33.0
2590 Female, age 75, unknown 32.4
2699 Male, age 18, unknown 31.9
1941 Male, age 53, unknown 31.8
2241 Male, age 72, unknown 30.6
Superior colliculus
nTPM: 35.1
1995 Male, age 72, unknown 37.2
2261 Male, age 18, unknown 36.9
2668 Female, age 75, unknown 36.6
1913 Female, age 42, unknown 35.4
2664 Male, age 75, both hemispheres 35.3
2587 Male, age 74, left hemisphere 35.0
2087 Female, age 72, unknown 34.4
1796 Male, age 53, unknown 34.3
1895 Male, age 76, right hemisphere 33.3
1839 Male, age 51, unknown 32.7
Ventral tegmental area
nTPM: 34.9
1942 Male, age 51, unknown 38.8
1915 Female, age 42, unknown 36.9
2410 Female, age 72, unknown 36.2
2021 Male, age 53, unknown 33.6
2218 Male, age 76, both hemispheres 32.0
2223 Female, age 72, unknown 31.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 59.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 59.9
Samples: 139

Max nTPM: 130.1
Min nTPM: 27.6
Std nTPM: 18.1
Median nTPM: 57.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 130.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 128.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 110.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 107.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 105.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 96.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 95.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 94.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 93.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 93.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 86.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 48.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 48.8
FF:10158-103A5 76 years, female 48.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 33.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.1
Samples: 4

Max nTPM: 35.4
Min nTPM: 31.5
Sample A Male 35.4
Sample B Male 32.2
Sample C Female 31.5
Sample D Female 33.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68498741 Antisense, RP_050113_02_D04, Mouse strain C57BL/6J (56 days, male) 0.1

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