BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:14.9 nTPM
HPA:14.9 nTPM
GTEx:12.1 nTPM
FANTOM5:41.3 Scaled Tags Per Million
Pig:4.6 nTPM
Mouse:27.1 nTPM
Allen mouse:0.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 14.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 12.5
2481 Female, age 94, left hemisphere 14.1
2289 Male, age 61, right hemisphere 12.7
1781 Male, age 74, unknown 12.6
1854 Male, age 80, left hemisphere 12.6
2290 Female, age 72, unknown 12.2
2846 Female, age 79, unknown 12.2
2288 Male, age 75, left hemisphere 12.1
1857 Female, age 85, left hemisphere 11.7
Claustrum
nTPM: 13.5
2292 Female, age 85, both hemispheres 15.6
2645 Female, age 72, unknown 13.6
1956 Male, age 74, unknown 13.4
2284 Female, age 91, both hemispheres 13.4
2198 Male, age 80, both hemispheres 13.3
2491 Male, age 75, both hemispheres 13.3
2196 Female, age 79, unknown 13.0
2392 Female, age 94, both hemispheres 12.7
2568 Male, age 61, both hemispheres 12.6
Globus pallidus, externus
nTPM: 14.9
2567 Female, age 72, unknown 15.7
2646 Male, age 61, right hemisphere 15.5
1996 Male, age 80, right hemisphere 15.3
2772 Female, age 79, unknown 14.1
2395 Male, age 75, both hemispheres 14.0
Globus pallidus, internus
nTPM: 14.8
2111 Female, age 85, right hemisphere 16.3
1818 Male, age 74, unknown 14.9
2778 Female, age 91, both hemispheres 14.8
2037 Male, age 80, right hemisphere 14.6
2566 Female, age 72, unknown 14.5
2483 Female, age 94, right hemisphere 14.3
2287 Male, age 75, right hemisphere 14.1
Nucleus accumbens
nTPM: 12.7
2732 Male, age 80, right hemisphere 13.9
2391 Female, age 94, left hemisphere 12.9
1806 Female, age 85, left hemisphere 12.8
2698 Female, age 72, unknown 12.8
2824 Male, age 61, right hemisphere 12.6
2286 Male, age 75, left hemisphere 12.5
1783 Male, age 74, unknown 12.3
1856 Female, age 91, right hemisphere 11.7
Nucleus basalis of Meynert
nTPM: 13.1
2569 Male, age 61, both hemispheres 14.9
2484 Female, age 94, left hemisphere 12.8
2821 Male, age 75, both hemispheres 12.4
2393 Male, age 80, right hemisphere 12.3
Nucleus of the diagonal band
nTPM: 12.6
1979 Male, age 74, unknown 13.2
2195 Female, age 85, both hemispheres 13.1
2775 Male, age 80, right hemisphere 12.7
1812 Female, age 91, both hemispheres 12.3
2029 Male, age 61, right hemisphere 11.9
Olfactory tubercle
nTPM: 12.8
2487 Female, age 94, left hemisphere 13.3
1846 Male, age 80, right hemisphere 13.2
2856 Male, age 75, right hemisphere 12.8
1998 Female, age 91, both hemispheres 12.0
Putamen
nTPM: 12.7
2482 Female, age 94, left hemisphere 13.8
2489 Female, age 72, unknown 13.5
2647 Male, age 75, left hemisphere 13.5
1829 Male, age 74, unknown 12.5
1937 Female, age 91, right hemisphere 12.1
2466 Female, age 79, unknown 12.0
1838 Male, age 80, right hemisphere 11.9
Septal nuclei
nTPM: 13.2
1960 Male, age 74, unknown 14.1
2059 Female, age 85, both hemispheres 14.0
2199 Male, age 80, right hemisphere 13.4
2394 Male, age 61, left hemisphere 13.4
2629 Female, age 94, right hemisphere 12.7
2031 Female, age 72, unknown 12.6
2009 Female, age 91, both hemispheres 12.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 12.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 11.5
Samples: 246

Max nTPM: 19.0
Min nTPM: 5.5
Std nTPM: 2.3
Median nTPM: 11.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 19.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 18.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 17.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 16.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 16.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 15.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 15.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 15.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 15.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 15.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 15.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 11.7
Samples: 246

Max nTPM: 27.6
Min nTPM: 6.2
Std nTPM: 3.0
Median nTPM: 11.2
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 27.6
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 19.7
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 19.5
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 19.5
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 19.4
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 19.0
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 18.6
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 18.3
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 18.3
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 18.2
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 18.0
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Brain - Putamen (basal ganglia)
Average nTPM: 12.1
Samples: 205

Max nTPM: 19.7
Min nTPM: 7.1
Std nTPM: 2.4
Median nTPM: 12.0
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 19.7
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 18.7
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 18.4
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 18.1
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 18.0
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 17.6
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 16.9
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 16.8
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 16.5
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 16.5
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 16.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 41.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 24.1
FF:10164-103B2 76 years, female 24.1
Globus pallidus
Scaled Tags Per Million: 41.3
FF:10175-103C4 60 years, female 48.9
FF:10161-103A8 76 years, female 33.7
Nucleus accumbens
Scaled Tags Per Million: 21.5
FF:10037-101F1 23-56 years, mixed 21.5
Putamen
Scaled Tags Per Million: 18.5
FF:10176-103C5 60 years, female 18.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 4.6
Pig sample Sample description nTPM
Caudate
nTPM: 3.2
Samples: 4

Max nTPM: 3.5
Min nTPM: 2.7
Sample A Female 3.3
Sample B Female 3.4
Sample C Male 3.5
Sample D Male 2.7
Putamen
nTPM: 3.4
Samples: 4

Max nTPM: 4.4
Min nTPM: 2.7
Sample A Female 4.4
Sample B Female 2.7
Sample C Male 3.5
Sample D Male 3.0
Septum
nTPM: 4.6
Samples: 4

Max nTPM: 5.3
Min nTPM: 3.8
Sample A Female 4.9
Sample B Female 3.8
Sample C Male 5.3
Sample D Male 4.3
Ventral pallidum
nTPM: 4.1
Samples: 4

Max nTPM: 5.8
Min nTPM: 3.1
Sample A Female 3.1
Sample B Female 4.0
Sample C Male 5.8
Sample D Male 3.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 27.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 27.1
Samples: 4

Max nTPM: 28.9
Min nTPM: 24.5
Sample A Male 24.5
Sample B Male 27.2
Sample C Female 27.8
Sample D Female 28.9
Septum
nTPM: 25.0
Samples: 4

Max nTPM: 26.6
Min nTPM: 21.2
Sample A Male 21.2
Sample B Male 26.2
Sample C Female 25.9
Sample D Female 26.6
Ventral forebrain
nTPM: 24.6
Samples: 4

Max nTPM: 26.9
Min nTPM: 23.3
Sample A Male 23.3
Sample B Male 24.2
Sample C Female 26.9
Sample D Female 23.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
1629 Antisense, RP_040428_01_E07, Mouse strain C57BL/6J (56 days, male) 0.1
1630 Antisense, RP_040428_01_E07, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.2
1629 Antisense, RP_040428_01_E07, Mouse strain C57BL/6J (56 days, male) 0.2
1630 Antisense, RP_040428_01_E07, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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