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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:203.8 nTPM
HPA:203.8 nTPM
GTEx:116.6 nTPM
FANTOM5:329.4 Scaled Tags Per Million
Pig:67.9 nTPM
Mouse:47.3 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 203.8
Sample id Sample description nTPM
Amygdala
nTPM: 186.6
2814 Male, age 76, right hemisphere 193.6
2517 Female, age 94, left hemisphere 189.8
2695 Female, age 67, right hemisphere 189.5
2514 Male, age 75, right hemisphere 182.2
1987 Female, age 91, left hemisphere 178.1
Basal amygdala
nTPM: 203.8
2827 Female, age 67, right hemisphere 228.4
2243 Female, age 91, right hemisphere 209.6
2685 Female, age 94, left hemisphere 207.0
1955 Male, age 76, both hemispheres 199.9
2609 Male, age 75, right hemisphere 194.5
2110 Male, age 80, left hemisphere 183.3
Central amygdala
nTPM: 195.8
2701 Female, age 91, right hemisphere 207.8
1905 Male, age 76, both hemispheres 201.3
2239 Male, age 80, left hemisphere 195.5
2826 Female, age 94, left hemisphere 194.2
2515 Male, age 75, right hemisphere 180.2
Corticomedial amygdala
nTPM: 203.1
2535 Female, age 67, right hemisphere 239.6
2240 Male, age 76, both hemispheres 215.2
2429 Female, age 94, left hemisphere 202.0
2242 Female, age 91, right hemisphere 192.0
2428 Male, age 75, right hemisphere 187.4
2829 Male, age 80, left hemisphere 182.4
Lateral amygdala
nTPM: 200.9
2255 Female, age 91, right hemisphere 212.5
2256 Male, age 80, left hemisphere 211.7
2830 Female, age 67, right hemisphere 208.0
2534 Female, age 94, left hemisphere 199.7
1883 Male, age 76, both hemispheres 187.3
2516 Male, age 75, right hemisphere 186.6
Stria terminalis, bed nucleus
nTPM: 195.2
2201 Male, age 74, unknown 209.6
2486 Female, age 94, both hemispheres 193.3
1974 Female, age 91, both hemispheres 182.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 116.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 116.6
Samples: 152

Max nTPM: 249.8
Min nTPM: 40.6
Std nTPM: 34.9
Median nTPM: 115.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 249.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 241.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 219.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 196.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 194.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 183.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 181.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 180.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 165.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 164.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 164.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 164.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 162.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 159.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 159.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 156.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 156.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 155.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 154.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 152.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 151.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 147.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 146.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 145.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 145.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 145.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 145.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 143.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 142.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 141.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 140.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 140.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 139.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 138.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 137.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 137.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 136.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 135.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 135.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 135.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 134.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 134.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 133.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 133.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 130.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 129.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 129.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 129.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 129.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 128.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 128.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 127.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 127.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 126.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 126.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 126.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 126.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 125.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 125.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 124.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 123.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 122.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 121.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 121.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 121.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 120.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 120.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 119.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 118.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 118.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 118.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 117.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 117.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 117.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 115.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 115.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 115.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 114.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 114.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 114.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 113.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 112.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 112.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 111.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 110.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 110.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 109.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 107.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 105.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 105.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 105.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 105.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 104.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 104.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 103.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 103.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 103.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 102.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 101.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 101.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 100.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 100.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 99.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 99.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 98.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 98.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 98.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 96.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 96.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 96.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 94.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 94.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 94.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 93.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 92.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 92.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 91.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 91.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 90.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 90.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 90.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 89.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 88.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 88.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 87.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 86.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 83.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 83.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 82.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 82.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 81.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 80.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 79.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 79.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 79.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 77.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 76.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 75.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 74.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 71.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 71.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 70.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 65.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 65.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 64.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 59.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 57.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 54.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 52.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 50.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 48.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 40.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 329.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 329.4
FF:10151-102I7 76 years, female 329.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 67.9
Pig sample Sample description nTPM
Amygdala
nTPM: 67.9
Samples: 4

Max nTPM: 76.7
Min nTPM: 61.7
Sample A Female 76.7
Sample B Female 61.7
Sample C Male 62.5
Sample D Male 70.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 47.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 47.3
Samples: 4

Max nTPM: 55.7
Min nTPM: 38.5
Sample A Male 43.3
Sample B Male 55.7
Sample C Female 38.5
Sample D Female 51.5

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