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SRRM2
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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:208.7 nTPM
HPA:208.7 nTPM
FANTOM5:288.8 Scaled Tags Per Million
Pig:72.6 nTPM

PONS - HPA Brain RNA-seq
Max nTPM 208.7
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 206.0
2301 Female, age 85, both hemispheres 211.3
2188 Female, age 91, both hemispheres 208.4
2090 Male, age 80, both hemispheres 204.5
1984 Male, age 76, both hemispheres 199.9
Dorsal cochlear nucleus
nTPM: 193.0
2378 Male, age 80, both hemispheres 200.2
2187 Female, age 91, both hemispheres 198.0
2802 Male, age 74, right hemisphere 190.9
2058 Male, age 76, both hemispheres 188.6
2370 Male, age 61, both hemispheres 187.4
Dorsal tegmental nucleus
nTPM: 200.7
2358 Male, age 61, both hemispheres 227.9
2083 Male, age 80, both hemispheres 195.0
2326 Male, age 74, both hemispheres 193.0
1936 Male, age 76, left hemisphere 186.7
Dorsolateral tegmental area
nTPM: 195.4
2337 Male, age 61, both hemispheres 224.2
2141 Male, age 76, both hemispheres 198.5
2360 Male, age 74, both hemispheres 190.8
2654 Male, age 80, both hemispheres 184.3
2751 Female, age 85, both hemispheres 179.2
Kolliker-Fuse nucleus
nTPM: 208.4
2793 Female, age 91, left hemisphere 231.7
2163 Male, age 80, both hemispheres 197.5
2315 Male, age 76, right hemisphere 196.0
Lateral lemniscal nuclei
nTPM: 208.4
2320 Female, age 91, left hemisphere 226.2
2453 Male, age 74, right hemisphere 208.0
2036 Male, age 80, both hemispheres 207.3
2169 Male, age 76, both hemispheres 205.1
2746 Female, age 85, left hemisphere 195.7
Lateral parabrachial nucleus
nTPM: 196.2
2792 Male, age 76, both hemispheres 206.1
2139 Female, age 85, right hemisphere 196.2
2013 Male, age 80, both hemispheres 194.8
2790 Male, age 61, both hemispheres 187.6
Lateral vestibular nucleus
nTPM: 200.1
2184 Male, age 76, both hemispheres 203.1
2311 Male, age 80, both hemispheres 197.1
Locus coeruleus
nTPM: 187.4
2720 Male, age 74, both hemispheres 207.2
2162 Male, age 80, both hemispheres 196.7
2317 Female, age 72, unknown 184.2
1980 Male, age 76, both hemispheres 182.7
2788 Male, age 74, unknown 182.1
2123 Female, age 91, both hemispheres 179.6
2014 Male, age 55, unknown 179.1
Medial olivary nucleus
nTPM: 203.8
2851 Male, age 80, both hemispheres 227.9
1943 Male, age 61, both hemispheres 200.7
2138 Female, age 91, both hemispheres 194.5
1962 Male, age 76, both hemispheres 192.3
Medial parabrachial nucleus
nTPM: 197.0
2854 Male, age 80, both hemispheres 208.1
2786 Male, age 76, both hemispheres 203.1
2156 Male, age 61, both hemispheres 201.6
2170 Female, age 91, both hemispheres 191.4
2463 Female, age 85, right hemisphere 181.0
Medial periolivary nuclei
nTPM: 202.6
2458 Female, age 91, both hemispheres 232.7
2081 Male, age 80, both hemispheres 217.1
2171 Female, age 85, both hemispheres 203.8
2791 Male, age 74, right hemisphere 180.9
2063 Male, age 76, both hemispheres 178.2
Motor facial nucleus
nTPM: 205.9
2697 Female, age 85, both hemispheres 232.6
2327 Male, age 80, both hemispheres 224.8
2795 Female, age 91, both hemispheres 207.0
2365 Male, age 74, right hemisphere 197.9
2126 Male, age 61, both hemispheres 189.2
2062 Male, age 76, both hemispheres 183.9
Motor trigeminal nucleus
nTPM: 208.7
2321 Female, age 91, both hemispheres 226.4
2079 Male, age 80, both hemispheres 213.3
2560 Male, age 74, both hemispheres 208.7
2335 Male, age 61, both hemispheres 202.9
2309 Male, age 76, both hemispheres 192.3
Nuclei of the trapezoid body
nTPM: 197.5
2166 Male, age 80, both hemispheres 219.0
2368 Female, age 91, both hemispheres 207.6
2159 Male, age 61, both hemispheres 193.1
2735 Female, age 85, both hemispheres 186.3
1983 Male, age 76, both hemispheres 181.3
Paramedian reticular nucleus
nTPM: 182.7
2050 Female, age 85, both hemispheres 185.7
2052 Male, age 76, both hemispheres 184.0
2057 Male, age 80, both hemispheres 180.6
2313 Male, age 61, both hemispheres 180.6
Pontine nuclei
nTPM: 197.2
2115 Male, age 80, left hemisphere 229.5
2319 Female, age 91, both hemispheres 214.6
2787 Female, age 85, both hemispheres 200.3
2454 Male, age 74, left hemisphere 196.7
1968 Male, age 76, left hemisphere 190.3
1863 Male, age 55, unknown 186.3
2109 Female, age 72, unknown 180.5
2727 Male, age 61, right hemisphere 179.4
Pontine raphe nucleus
nTPM: 188.4
2122 Female, age 85, midline 192.1
2853 Male, age 76, midline 184.7
Posteroventral cochlear nucleus
nTPM: 197.1
2135 Female, age 91, both hemispheres 221.5
2341 Male, age 80, both hemispheres 203.9
2070 Male, age 76, both hemispheres 192.0
2371 Male, age 61, both hemispheres 189.5
2752 Female, age 85, both hemispheres 178.7
Principal sensory trigeminal nucleus
nTPM: 204.4
2367 Female, age 91, left hemisphere 223.5
2324 Male, age 76, both hemispheres 207.0
2008 Male, age 80, left hemisphere 193.8
2158 Male, age 61, both hemispheres 193.4
Reticular pontine nucleus, caudal
nTPM: 206.5
2332 Male, age 80, right hemisphere 226.2
2457 Female, age 91, both hemispheres 211.1
2559 Male, age 74, both hemispheres 194.6
2092 Male, age 76, both hemispheres 194.0
Reticular pontine nucleus, oral
nTPM: 197.5
2366 Female, age 91, both hemispheres 230.1
2167 Male, age 76, both hemispheres 198.0
2012 Female, age 85, both hemispheres 187.9
1939 Male, age 80, both hemispheres 186.1
2361 Male, age 74, both hemispheres 185.5
Reticulotegmental nucleus
nTPM: 201.7
2333 Male, age 80, both hemispheres 211.0
2322 Female, age 91, both hemispheres 205.9
2452 Male, age 74, both hemispheres 205.6
2325 Male, age 76, both hemispheres 184.2
Spinal trigeminal nucleus, oral
nTPM: 196.2
2164 Male, age 80, both hemispheres 209.7
1978 Male, age 76, both hemispheres 195.0
2737 Female, age 85, both hemispheres 184.0
Subcoeruleus area
nTPM: 196.2
2089 Male, age 76, left hemisphere 207.3
2451 Male, age 74, both hemispheres 201.2
2323 Female, age 91, left hemisphere 197.4
1958 Male, age 80, both hemispheres 188.1
2369 Female, age 85, left hemisphere 187.1
Superior olive
nTPM: 204.7
2329 Male, age 80, right hemisphere 226.3
2561 Female, age 91, both hemispheres 224.8
1875 Female, age 85, both hemispheres 191.7
2020 Male, age 76, both hemispheres 191.6
2364 Male, age 74, right hemisphere 188.9
Superior vestibular nucleus
nTPM: 182.7
2061 Male, age 76, both hemispheres 190.4
2383 Male, age 74, both hemispheres 180.9
2015 Male, age 80, both hemispheres 176.8
Ventral periolivary nuclei
nTPM: 205.0
2130 Female, age 85, both hemispheres 219.3
2794 Female, age 91, left hemisphere 211.9
2165 Male, age 80, both hemispheres 205.3
2023 Male, age 76, both hemispheres 183.5
Ventrolateral tegmental area, A5 NE cell group
nTPM: 206.4
2456 Female, age 91, both hemispheres 223.2
2840 Female, age 85, both hemispheres 207.9
2161 Male, age 80, both hemispheres 206.3
2449 Male, age 74, both hemispheres 205.2
1959 Male, age 76, both hemispheres 198.5
2359 Male, age 61, both hemispheres 197.4

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 288.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 288.8
FF:10165-103B3 76 years, female 318.5
FF:10182-103D2 60 years, female 259.2
Pons
Scaled Tags Per Million: 279.9
FF:10033-101E6 18-54 years, mixed 279.9

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 72.6
Pig sample Sample description nTPM
Pons
nTPM: 72.6
Samples: 4

Max nTPM: 87.0
Min nTPM: 65.1
Sample A Female 87.0
Sample B Female 69.0
Sample C Male 65.1
Sample D Male 69.2

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