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DDB1
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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:162.5 nTPM
GTEx:162.5 nTPM
FANTOM5:155.5 Scaled Tags Per Million
Pig:93.3 nTPM
Mouse:343.8 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 162.5
GTEx sample id Sample description nTPM
Retina
Average nTPM: 162.5
Samples: 105

Max nTPM: 252.4
Min nTPM: 52.6
Std nTPM: 48.4
Median nTPM:
172_1 72 years, female 252.4
352_1 62 years, male 250.7
319_1 81 years, male 249.3
177_1 74 years, male 240.9
375_1 74 years, female 234.5
425_1 59 years, female 234.0
6_1 73 years, female 231.1
246_1 77 years, male 231.0
163_1 78 years, male 227.4
386_1 76 years, male 227.2
237_1 82 years, male 226.2
115_1 83 years, male 222.8
9_1 66 years, female 218.7
126_1 63 years, male 218.5
229_1 69 years, female 216.9
389_1 86 years, female 214.0
321_1 62 years, female 211.5
347_1 72 years, male 211.1
503_1 68 years, male 211.1
335_1 73 years, female 210.2
526_1 61 years, male 209.5
35_1 74 years, female 207.9
404_1 82 years, female 206.8
406_1 79 years, male 205.6
243_1 75 years, male 205.1
376_1 75 years, female 202.8
189_1 76 years, male 201.6
355_1 70 years, female 200.8
292_1 71 years, male 200.6
468_1 89 years, male 196.6
447_1 81 years, male 196.2
349_1 83 years, male 193.9
251_1 78 years, male 190.6
480_1 63 years, male 186.8
218_1 71 years, female 186.5
324_1 76 years, male 185.8
153_1 70 years, female 185.4
384_1 83 years, male 184.2
350_1 84 years, female 183.9
396_1 62 years, male 182.3
394_1 75 years, female 182.2
377_1 82 years, female 178.7
18_1 88 years, male 178.4
354_1 81 years, female 178.2
405_1 91 years, male 175.6
217_1 76 years, male 172.6
517_1 88 years, male 172.6
356_1 87 years, female 171.6
286_1 68 years, female 170.7
291_1 76 years, male 170.4
318_1 68 years, male 169.9
353_1 82 years, female 169.6
320_1 89 years, female 167.9
379_1 60 years, male 167.6
265_1 87 years, male 167.3
117_1 61 years, male 167.2
518_1 75 years, female 166.7
145_1 84 years, male 165.6
293_1 68 years, female 162.1
499_1 55 years, female 162.0
348_1 84 years, male 158.9
351_1 91 years, male 154.9
32_1 67 years, male 153.3
316_1 62 years, male 151.5
137_1 83 years, male 151.0
81_1 67 years, male 146.1
506_1 65 years, male 145.7
266_1 85 years, male 144.4
99_1 64 years, male 142.6
173_1 67 years, male 139.2
254_1 77 years, female 137.7
415_1 77 years, female 136.5
17_1 71 years, male 135.7
313_1 79 years, female 133.1
311_1 78 years, male 127.7
142_1 61 years, female 126.4
162_1 79 years, female 125.8
43_1 64 years, female 124.0
288_1 66 years, female 123.8
264_1 73 years, female 123.6
120_1 70 years, female 122.4
322_1 76 years, male 121.9
414_1 84 years, female 121.0
139_1 64 years, female 120.3
42_1 85 years, male 118.6
295_1 61 years, female 117.9
109_1 81 years, female 112.6
315_1 62 years, female 111.0
4_1 88 years, female 109.7
452_1 88 years, female 109.5
307_1 66 years, female 108.9
490_1 67 years, female 105.3
314_1 67 years, male 96.2
466_1 57 years, female 96.2
119_1 70 years, female 93.6
317_1 60 years, male 92.9
149_1 88 years, male 90.3
2_1 77 years, female 84.8
413_1 59 years, female 84.7
89_1 63 years, male 78.0
41_1 94 years, female 76.9
501_1 88 years, male 74.1
308_1 70 years, female 57.5
491_1 89 years, female 53.1
495_1 57 years, female 52.6
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 155.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 155.5
FF:10030-101E3 24-65 years, mixed 155.5

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 93.3
Pig sample Sample description nTPM
Retina
nTPM: 93.3
Samples: 4

Max nTPM: 105.0
Min nTPM: 81.6
Sample A Female 81.6
Sample B Female 104.8
Sample C Male 105.0
Sample D Male 81.8

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 343.8
Mouse sample Sample description nTPM
Retina
nTPM: 343.8
Samples: 4

Max nTPM: 345.0
Min nTPM: 343.3
Sample A Male 343.5
Sample B Male 343.3
Sample C Female 343.4
Sample D Female 345.0

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by the Knut & Alice Wallenberg Foundation.