MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:139.0 nTPM
HPA:139.0 nTPM
GTEx:118.2 nTPM
FANTOM5:72.6 Scaled Tags Per Million
Pig:97.6 nTPM
Mouse:76.9 nTPM
Allen mouse:5.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 139.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 102.7
2666 Male, age 74, left hemisphere 155.2
2586 Male, age 75, left hemisphere 131.5
1827 Male, age 72, unknown 110.7
2411 Female, age 72, unknown 100.9
2219 Male, age 76, both hemispheres 97.3
1870 Female, age 42, unknown 89.4
2828 Female, age 72, unknown 89.0
1833 Male, age 53, unknown 87.6
1830 Male, age 51, unknown 82.6
2019 Male, age 18, unknown 82.4
Dorsal raphe nucleus
nTPM: 122.2
2298 Female, age 72, unknown 149.3
2047 Male, age 72, unknown 143.2
1828 Male, age 53, unknown 122.0
2750 Male, age 76, both hemispheres 110.2
2016 Female, age 72, unknown 86.2
Inferior colliculus
nTPM: 99.1
2097 Female, age 72, unknown 114.2
2849 Male, age 72, unknown 100.2
1848 Female, age 42, unknown 99.9
1890 Male, age 53, unknown 82.0
Median raphe nucleus
nTPM: 139.0
2220 Male, age 76, midline 139.0
Pedunculopontine tegmental nucleus
nTPM: 103.5
2334 Male, age 80, both hemispheres 130.5
1921 Female, age 85, both hemispheres 116.8
2338 Male, age 61, both hemispheres 63.3
Periaquaductal grey, anterior
nTPM: 109.3
1947 Male, age 18, unknown 120.2
1795 Male, age 51, unknown 112.5
2502 Female, age 75, unknown 95.2
Periaquaductal grey, dorsal
nTPM: 95.6
1840 Male, age 53, unknown 117.5
2850 Male, age 76, both hemispheres 91.6
1831 Male, age 72, unknown 88.1
2464 Female, age 72, unknown 85.4
Periaquaductal grey, lateral
nTPM: 85.8
2053 Male, age 18, unknown 90.3
2140 Male, age 76, both hemispheres 85.3
2272 Male, age 74, both hemispheres 81.6
Pretectal area
nTPM: 103.8
2224 Female, age 72, unknown 137.2
1816 Male, age 51, unknown 124.1
2007 Male, age 72, unknown 111.6
1944 Female, age 72, unknown 108.5
1817 Female, age 42, unknown 106.7
2825 Male, age 18, unknown 104.4
2667 Female, age 75, unknown 103.4
1815 Male, age 53, unknown 100.7
2273 Male, age 74, both hemispheres 93.7
2407 Male, age 75, both hemispheres 81.6
2316 Male, age 76, right hemisphere 70.0
Red nucleus
nTPM: 66.6
2584 Male, age 75, left hemisphere 107.4
2785 Male, age 18, unknown 75.6
1821 Female, age 72, unknown 70.8
1954 Female, age 42, unknown 68.7
2227 Male, age 72, unknown 66.4
2769 Male, age 72, unknown 66.2
2725 Female, age 75, unknown 64.3
2588 Male, age 74, left hemisphere 59.7
1904 Male, age 53, unknown 59.5
1865 Male, age 51, unknown 56.1
2823 Male, age 76, right hemisphere 53.5
2503 Female, age 72, unknown 51.7
Substantia nigra
nTPM: 106.7
1916 Female, age 42, unknown 139.6
1851 Male, age 51, unknown 117.5
1941 Male, age 53, unknown 115.7
2241 Male, age 72, unknown 114.9
2583 Male, age 75, right hemisphere 112.2
1889 Female, age 72, unknown 108.2
2665 Male, age 74, both hemispheres 108.0
2409 Female, age 72, unknown 102.0
2699 Male, age 18, unknown 80.3
2590 Female, age 75, unknown 68.9
Superior colliculus
nTPM: 99.1
2668 Female, age 75, unknown 170.5
2664 Male, age 75, both hemispheres 114.8
2261 Male, age 18, unknown 106.0
1796 Male, age 53, unknown 105.5
2087 Female, age 72, unknown 101.8
1839 Male, age 51, unknown 100.0
1895 Male, age 76, right hemisphere 90.7
2587 Male, age 74, left hemisphere 73.7
1913 Female, age 42, unknown 65.3
1995 Male, age 72, unknown 62.3
Ventral tegmental area
nTPM: 109.0
1915 Female, age 42, unknown 121.3
2218 Male, age 76, both hemispheres 117.6
2410 Female, age 72, unknown 113.6
2021 Male, age 53, unknown 106.8
1942 Male, age 51, unknown 105.0
2223 Female, age 72, unknown 89.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 118.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 118.2
Samples: 139

Max nTPM: 468.7
Min nTPM: 12.9
Std nTPM: 75.5
Median nTPM: 92.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 468.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 377.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 369.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 290.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 279.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 277.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 246.1
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 241.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 236.5
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 230.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 229.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 72.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 72.6
FF:10158-103A5 76 years, female 72.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 97.6
Pig sample Sample description nTPM
Midbrain
nTPM: 86.4
Samples: 4

Max nTPM: 99.4
Min nTPM: 78.9
Sample A Female 84.7
Sample B Female 78.9
Sample C Male 82.4
Sample D Male 99.4
Periaqueductal gray
nTPM: 94.1
Samples: 3

Max nTPM: 116.1
Min nTPM: 78.0
Sample B Female 78.0
Sample C Male 116.1
Sample D Male 88.2
Substantia nigra
nTPM: 97.6
Samples: 4

Max nTPM: 130.9
Min nTPM: 59.9
Sample A Female 130.9
Sample B Female 72.3
Sample C Male 127.4
Sample D Male 59.9
Superior colliculi
nTPM: 83.9
Samples: 4

Max nTPM: 104.3
Min nTPM: 61.8
Sample A Female 104.3
Sample B Female 61.8
Sample C Male 75.5
Sample D Male 93.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 76.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 76.9
Samples: 4

Max nTPM: 80.6
Min nTPM: 71.0
Sample A Male 78.6
Sample B Male 71.0
Sample C Female 77.3
Sample D Female 80.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.4
68798085 Antisense, RP_050215_01_G03, Mouse strain C57BL/6J (56 days, male) 5.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.