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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:842.4 nTPM
HPA:842.4 nTPM
GTEx:1061.9 nTPM
FANTOM5:85.0 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 842.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 800.0
2565 Male, age 75, midline 825.8
1981 Female, age 72, midline 813.5
2048 Male, age 55, midline 792.2
2816 Male, age 47, midline 788.3
2194 Female, age 79, both hemispheres 780.1
Cervical spinal cord, dorsal horn
nTPM: 795.6
2173 Female, age 72, unknown 836.1
2296 Male, age 66, both hemispheres 821.6
2069 Male, age 47, both hemispheres 802.1
1877 Male, age 55, unknown 800.7
2297 Male, age 75, both hemispheres 760.7
2721 Male, age 90, both hemispheres 752.1
Cervical spinal cord, ventral horn
nTPM: 842.4
2480 Male, age 75, both hemispheres 932.8
2809 Male, age 90, both hemispheres 865.2
2098 Female, age 72, unknown 836.7
2068 Male, age 55, unknown 824.3
2295 Male, age 66, both hemispheres 822.1
2820 Female, age 79, both hemispheres 773.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1061.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1061.9
Samples: 159

Max nTPM: 2212.6
Min nTPM: 400.5
Std nTPM: 340.3
Median nTPM: 1004.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 2212.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 2121.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1948.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1914.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1836.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1832.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1808.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1791.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1678.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1642.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1639.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1633.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1612.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1544.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1524.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1511.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1502.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1494.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1490.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1477.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1458.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1457.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1442.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1410.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1403.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1401.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1375.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1370.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1358.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1353.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1316.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1316.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1314.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1307.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1283.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1260.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1259.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1249.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1249.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1238.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1235.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1224.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1224.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1214.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1200.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1197.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1193.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1192.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1171.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1169.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1165.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1159.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1154.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1152.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1141.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1130.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1121.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1115.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1105.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1102.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1100.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1090.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1088.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1088.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1084.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1080.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1076.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1074.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1069.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1068.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1067.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1065.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1059.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1057.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1057.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1055.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1052.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1041.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1032.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 1004.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1001.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 996.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 994.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 994.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 975.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 974.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 960.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 955.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 952.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 952.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 947.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 945.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 944.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 941.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 936.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 934.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 933.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 917.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 917.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 917.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 912.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 911.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 908.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 905.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 905.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 902.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 893.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 892.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 886.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 886.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 877.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 876.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 873.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 869.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 867.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 863.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 856.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 840.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 838.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 834.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 826.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 825.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 812.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 804.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 791.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 785.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 773.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 770.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 766.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 766.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 760.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 755.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 745.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 737.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 732.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 731.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 731.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 727.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 723.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 719.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 713.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 704.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 699.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 695.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 684.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 664.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 654.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 634.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 617.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 594.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 562.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 548.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 545.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 528.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 517.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 471.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 462.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 441.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 400.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 85.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 85.0
FF:10181-103D1 60 years, female 93.3
FF:10159-103A6 76 years, female 76.7

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