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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:53.4 nTPM
HPA:53.4 nTPM
GTEx:43.3 nTPM
FANTOM5:34.3 Scaled Tags Per Million
Pig:18.9 nTPM
Mouse:17.9 nTPM
Allen mouse:1.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 53.4
Sample id Sample description nTPM
Amygdala
nTPM: 53.4
2695 Female, age 67, right hemisphere 65.7
2814 Male, age 76, right hemisphere 54.6
1987 Female, age 91, left hemisphere 52.5
2517 Female, age 94, left hemisphere 48.4
2514 Male, age 75, right hemisphere 46.1
Basal amygdala
nTPM: 45.8
1955 Male, age 76, both hemispheres 53.4
2243 Female, age 91, right hemisphere 48.2
2609 Male, age 75, right hemisphere 46.9
2110 Male, age 80, left hemisphere 46.2
2685 Female, age 94, left hemisphere 43.4
2827 Female, age 67, right hemisphere 36.6
Central amygdala
nTPM: 51.6
2515 Male, age 75, right hemisphere 61.9
1905 Male, age 76, both hemispheres 58.6
2239 Male, age 80, left hemisphere 48.6
2701 Female, age 91, right hemisphere 46.5
2826 Female, age 94, left hemisphere 42.0
Corticomedial amygdala
nTPM: 47.7
2242 Female, age 91, right hemisphere 53.2
2240 Male, age 76, both hemispheres 49.7
2428 Male, age 75, right hemisphere 49.1
2429 Female, age 94, left hemisphere 46.7
2829 Male, age 80, left hemisphere 46.3
2535 Female, age 67, right hemisphere 41.2
Lateral amygdala
nTPM: 46.1
2256 Male, age 80, left hemisphere 53.3
1883 Male, age 76, both hemispheres 53.1
2255 Female, age 91, right hemisphere 48.7
2516 Male, age 75, right hemisphere 43.8
2534 Female, age 94, left hemisphere 39.5
2830 Female, age 67, right hemisphere 38.2
Stria terminalis, bed nucleus
nTPM: 41.7
2201 Male, age 74, unknown 46.1
2486 Female, age 94, both hemispheres 41.0
1974 Female, age 91, both hemispheres 38.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 43.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 43.3
Samples: 152

Max nTPM: 189.5
Min nTPM: 3.6
Std nTPM: 25.8
Median nTPM: 39.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 189.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 149.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 121.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 102.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 102.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 90.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 85.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 85.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 85.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 82.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 82.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 81.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 81.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 80.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 77.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 77.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 77.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 76.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 71.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 69.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 67.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 63.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 63.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 62.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 62.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 59.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 59.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 58.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 58.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 57.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 56.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 55.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 55.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 54.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 54.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 53.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 52.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 52.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 51.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 51.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 51.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 51.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 50.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 49.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 49.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 48.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 48.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 48.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 48.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 47.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 47.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 47.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 46.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 45.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 45.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 45.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 45.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 45.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 45.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 44.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 44.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 44.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 43.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 43.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 42.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 42.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 41.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 41.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 40.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 40.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 40.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 40.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 39.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 39.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 39.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 39.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 39.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 39.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 39.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 38.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 38.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 38.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 38.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 37.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 36.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 36.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 36.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 36.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 35.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 35.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 35.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 35.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 34.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 34.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 34.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 33.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 32.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 32.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 32.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 32.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 30.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 30.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 29.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 29.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 29.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 28.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 28.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 28.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 28.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 27.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 27.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 26.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 26.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 25.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 25.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 25.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 24.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 24.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 24.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 24.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 23.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 23.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 23.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 22.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 22.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 21.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 21.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 21.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 21.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 21.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 21.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 21.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 21.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 20.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 19.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 19.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 18.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 17.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 16.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 16.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 16.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 13.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 12.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 11.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 10.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 10.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 9.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 9.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 8.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 8.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 8.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 3.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 34.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 34.3
FF:10151-102I7 76 years, female 34.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 18.9
Pig sample Sample description nTPM
Amygdala
nTPM: 19.0
Samples: 4

Max nTPM: 19.8
Min nTPM: 16.8
Sample A Female 19.7
Sample B Female 19.8
Sample C Male 19.5
Sample D Male 16.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 17.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 17.9
Samples: 4

Max nTPM: 19.3
Min nTPM: 16.3
Sample A Male 16.3
Sample B Male 16.8
Sample C Female 19.3
Sample D Female 19.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.1
75042270 Antisense, RP_060412_02_D12, Mouse strain C57BL/6J (56 days, male) 1.1
69549299 Antisense, RP_050201_01_A01, Mouse strain C57BL/6J (56 days, male) 1.1

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