BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:44.8 nTPM
HPA:44.8 nTPM
GTEx:47.1 nTPM
FANTOM5:20.2 Scaled Tags Per Million
Pig:9.5 nTPM
Mouse:76.7 nTPM
Allen mouse:1.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA044186Antibody HPA063605
Glial cells Not detectedMedium
Neuronal cells Not detectedNot detected





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 44.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 41.7
2289 Male, age 61, right hemisphere 42.9
2290 Female, age 72, unknown 42.9
1857 Female, age 85, left hemisphere 42.1
1781 Male, age 74, unknown 41.8
2481 Female, age 94, left hemisphere 41.7
2288 Male, age 75, left hemisphere 41.2
2846 Female, age 79, unknown 40.9
1854 Male, age 80, left hemisphere 40.1
Claustrum
nTPM: 41.7
2491 Male, age 75, both hemispheres 44.0
2198 Male, age 80, both hemispheres 43.5
2568 Male, age 61, both hemispheres 43.3
2284 Female, age 91, both hemispheres 42.3
2292 Female, age 85, both hemispheres 42.2
2645 Female, age 72, unknown 41.2
1956 Male, age 74, unknown 40.6
2392 Female, age 94, both hemispheres 39.2
2196 Female, age 79, unknown 39.1
Globus pallidus, externus
nTPM: 44.8
2646 Male, age 61, right hemisphere 46.9
2772 Female, age 79, unknown 45.6
1996 Male, age 80, right hemisphere 45.1
2395 Male, age 75, both hemispheres 43.6
2567 Female, age 72, unknown 42.7
Globus pallidus, internus
nTPM: 44.3
2483 Female, age 94, right hemisphere 46.7
2111 Female, age 85, right hemisphere 45.7
2778 Female, age 91, both hemispheres 44.6
2287 Male, age 75, right hemisphere 44.3
2566 Female, age 72, unknown 43.2
1818 Male, age 74, unknown 43.0
2037 Male, age 80, right hemisphere 42.8
Nucleus accumbens
nTPM: 42.4
1806 Female, age 85, left hemisphere 44.7
2824 Male, age 61, right hemisphere 44.3
2286 Male, age 75, left hemisphere 43.8
1783 Male, age 74, unknown 43.6
2732 Male, age 80, right hemisphere 42.1
1856 Female, age 91, right hemisphere 40.7
2391 Female, age 94, left hemisphere 40.0
2698 Female, age 72, unknown 39.9
Nucleus basalis of Meynert
nTPM: 41.8
2569 Male, age 61, both hemispheres 47.6
2484 Female, age 94, left hemisphere 42.3
2393 Male, age 80, right hemisphere 38.9
2821 Male, age 75, both hemispheres 38.4
Nucleus of the diagonal band
nTPM: 42.6
2775 Male, age 80, right hemisphere 44.2
1979 Male, age 74, unknown 43.0
2029 Male, age 61, right hemisphere 42.8
2195 Female, age 85, both hemispheres 41.6
1812 Female, age 91, both hemispheres 41.3
Olfactory tubercle
nTPM: 41.1
1998 Female, age 91, both hemispheres 42.3
1846 Male, age 80, right hemisphere 40.9
2487 Female, age 94, left hemisphere 40.7
2856 Male, age 75, right hemisphere 40.7
Putamen
nTPM: 41.0
2647 Male, age 75, left hemisphere 43.8
2466 Female, age 79, unknown 42.0
2482 Female, age 94, left hemisphere 41.6
1937 Female, age 91, right hemisphere 41.4
2489 Female, age 72, unknown 40.7
1838 Male, age 80, right hemisphere 38.8
1829 Male, age 74, unknown 38.7
Septal nuclei
nTPM: 41.8
1960 Male, age 74, unknown 45.7
2059 Female, age 85, both hemispheres 43.8
2394 Male, age 61, left hemisphere 42.6
2031 Female, age 72, unknown 42.5
2199 Male, age 80, right hemisphere 40.6
2009 Female, age 91, both hemispheres 40.3
2629 Female, age 94, right hemisphere 36.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 47.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 43.2
Samples: 246

Max nTPM: 88.5
Min nTPM: 21.3
Std nTPM: 9.1
Median nTPM: 42.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 88.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 67.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 66.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 64.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 63.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 63.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 62.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 62.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 61.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 60.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 60.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 47.1
Samples: 246

Max nTPM: 96.3
Min nTPM: 19.3
Std nTPM: 10.8
Median nTPM: 46.1
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 96.3
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 89.1
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 81.8
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 81.0
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 80.1
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 78.8
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 78.8
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 78.6
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 73.4
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 69.6
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 68.2
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Brain - Putamen (basal ganglia)
Average nTPM: 46.4
Samples: 205

Max nTPM: 82.1
Min nTPM: 24.7
Std nTPM: 9.1
Median nTPM: 45.0
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 82.1
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 78.0
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 76.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 76.2
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 69.8
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 68.1
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 65.8
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 65.0
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 64.7
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 64.5
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 63.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 16.8
FF:10164-103B2 76 years, female 16.8
Globus pallidus
Scaled Tags Per Million: 16.2
FF:10175-103C4 60 years, female 17.3
FF:10161-103A8 76 years, female 15.1
Nucleus accumbens
Scaled Tags Per Million: 15.2
FF:10037-101F1 23-56 years, mixed 15.2
Putamen
Scaled Tags Per Million: 20.2
FF:10176-103C5 60 years, female 20.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 9.5
Pig sample Sample description nTPM
Caudate
nTPM: 9.2
Samples: 4

Max nTPM: 10.0
Min nTPM: 7.8
Sample A Female 7.8
Sample B Female 10.0
Sample C Male 9.8
Sample D Male 9.0
Putamen
nTPM: 9.5
Samples: 4

Max nTPM: 10.7
Min nTPM: 8.5
Sample A Female 9.2
Sample B Female 8.5
Sample C Male 9.4
Sample D Male 10.7
Septum
nTPM: 9.0
Samples: 4

Max nTPM: 9.4
Min nTPM: 8.5
Sample A Female 8.7
Sample B Female 9.4
Sample C Male 8.5
Sample D Male 9.4
Ventral pallidum
nTPM: 9.4
Samples: 4

Max nTPM: 10.3
Min nTPM: 8.3
Sample A Female 8.3
Sample B Female 9.2
Sample C Male 10.3
Sample D Male 9.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 76.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 76.7
Samples: 4

Max nTPM: 85.3
Min nTPM: 70.3
Sample A Male 85.3
Sample B Male 78.8
Sample C Female 72.5
Sample D Female 70.3
Septum
nTPM: 67.0
Samples: 4

Max nTPM: 71.5
Min nTPM: 62.0
Sample A Male 64.7
Sample B Male 69.7
Sample C Female 71.5
Sample D Female 62.0
Ventral forebrain
nTPM: 67.0
Samples: 4

Max nTPM: 80.5
Min nTPM: 59.6
Sample A Male 64.9
Sample B Male 62.8
Sample C Female 80.5
Sample D Female 59.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.2
68161470 Antisense, RP_041122_01_D11, Mouse strain C57BL/6J (56 days, male) 1.2
Pallidum
Expression energy: 0.5
68161470 Antisense, RP_041122_01_D11, Mouse strain C57BL/6J (56 days, male) 0.5

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