MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:43.2 nTPM
HPA:43.2 nTPM
GTEx:39.9 nTPM
FANTOM5:15.5 Scaled Tags Per Million
Pig:10.1 nTPM
Mouse:40.7 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 43.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.4
2586 Male, age 75, left hemisphere 48.2
2411 Female, age 72, unknown 44.0
2828 Female, age 72, unknown 43.9
1827 Male, age 72, unknown 43.3
2019 Male, age 18, unknown 42.4
2219 Male, age 76, both hemispheres 41.2
1870 Female, age 42, unknown 40.7
2666 Male, age 74, left hemisphere 40.1
1833 Male, age 53, unknown 39.9
1830 Male, age 51, unknown 39.8
Dorsal raphe nucleus
nTPM: 42.1
2298 Female, age 72, unknown 44.2
2750 Male, age 76, both hemispheres 42.9
2016 Female, age 72, unknown 41.7
2047 Male, age 72, unknown 41.1
1828 Male, age 53, unknown 40.8
Inferior colliculus
nTPM: 40.8
2097 Female, age 72, unknown 43.0
1890 Male, age 53, unknown 42.9
1848 Female, age 42, unknown 39.0
2849 Male, age 72, unknown 38.2
Median raphe nucleus
nTPM: 40.0
2220 Male, age 76, midline 40.0
Pedunculopontine tegmental nucleus
nTPM: 39.3
1921 Female, age 85, both hemispheres 41.5
2334 Male, age 80, both hemispheres 40.0
2338 Male, age 61, both hemispheres 36.6
Periaquaductal grey, anterior
nTPM: 42.6
2502 Female, age 75, unknown 43.9
1795 Male, age 51, unknown 42.5
1947 Male, age 18, unknown 41.5
Periaquaductal grey, dorsal
nTPM: 39.5
2464 Female, age 72, unknown 40.9
1840 Male, age 53, unknown 40.6
1831 Male, age 72, unknown 39.9
2850 Male, age 76, both hemispheres 36.7
Periaquaductal grey, lateral
nTPM: 39.6
2272 Male, age 74, both hemispheres 40.7
2053 Male, age 18, unknown 39.5
2140 Male, age 76, both hemispheres 38.7
Pretectal area
nTPM: 42.1
2007 Male, age 72, unknown 44.8
1816 Male, age 51, unknown 43.8
1817 Female, age 42, unknown 43.5
1815 Male, age 53, unknown 43.1
2667 Female, age 75, unknown 43.0
1944 Female, age 72, unknown 42.3
2316 Male, age 76, right hemisphere 40.8
2224 Female, age 72, unknown 40.7
2273 Male, age 74, both hemispheres 40.6
2825 Male, age 18, unknown 40.1
2407 Male, age 75, both hemispheres 40.0
Red nucleus
nTPM: 43.2
2503 Female, age 72, unknown 45.0
1904 Male, age 53, unknown 44.5
2588 Male, age 74, left hemisphere 44.1
2227 Male, age 72, unknown 43.9
2769 Male, age 72, unknown 43.9
2785 Male, age 18, unknown 43.7
1865 Male, age 51, unknown 43.3
1954 Female, age 42, unknown 43.1
2823 Male, age 76, right hemisphere 42.1
1821 Female, age 72, unknown 42.0
2725 Female, age 75, unknown 41.6
2584 Male, age 75, left hemisphere 40.9
Substantia nigra
nTPM: 42.1
1916 Female, age 42, unknown 46.7
1851 Male, age 51, unknown 45.2
2583 Male, age 75, right hemisphere 44.2
2699 Male, age 18, unknown 41.8
2665 Male, age 74, both hemispheres 41.4
1889 Female, age 72, unknown 41.2
2590 Female, age 75, unknown 40.8
2241 Male, age 72, unknown 40.1
1941 Male, age 53, unknown 39.8
2409 Female, age 72, unknown 39.6
Superior colliculus
nTPM: 42.3
2261 Male, age 18, unknown 45.2
1796 Male, age 53, unknown 43.7
2664 Male, age 75, both hemispheres 43.5
2087 Female, age 72, unknown 43.2
2668 Female, age 75, unknown 42.7
1995 Male, age 72, unknown 42.4
1913 Female, age 42, unknown 41.8
2587 Male, age 74, left hemisphere 40.8
1839 Male, age 51, unknown 40.6
1895 Male, age 76, right hemisphere 39.5
Ventral tegmental area
nTPM: 43.1
2410 Female, age 72, unknown 45.7
1915 Female, age 42, unknown 43.9
2218 Male, age 76, both hemispheres 43.1
1942 Male, age 51, unknown 42.6
2021 Male, age 53, unknown 41.9
2223 Female, age 72, unknown 41.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 39.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.9
Samples: 139

Max nTPM: 85.8
Min nTPM: 19.4
Std nTPM: 9.6
Median nTPM: 39.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 85.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 83.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 62.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 62.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 60.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 59.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 55.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 53.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 53.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 52.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 51.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.5
FF:10158-103A5 76 years, female 15.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.1
Pig sample Sample description nTPM
Midbrain
nTPM: 10.1
Samples: 4

Max nTPM: 11.0
Min nTPM: 9.0
Sample A Female 11.0
Sample B Female 9.0
Sample C Male 10.1
Sample D Male 10.1
Periaqueductal gray
nTPM: 8.2
Samples: 3

Max nTPM: 8.3
Min nTPM: 8.1
Sample B Female 8.3
Sample C Male 8.2
Sample D Male 8.1
Substantia nigra
nTPM: 10.0
Samples: 4

Max nTPM: 10.8
Min nTPM: 8.7
Sample A Female 10.8
Sample B Female 8.7
Sample C Male 10.5
Sample D Male 10.1
Superior colliculi
nTPM: 9.0
Samples: 4

Max nTPM: 9.9
Min nTPM: 7.6
Sample A Female 9.4
Sample B Female 7.6
Sample C Male 9.1
Sample D Male 9.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 40.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 40.7
Samples: 4

Max nTPM: 44.3
Min nTPM: 37.8
Sample A Male 44.3
Sample B Male 37.8
Sample C Female 39.4
Sample D Female 41.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
68161470 Antisense, RP_041122_01_D11, Mouse strain C57BL/6J (56 days, male) 1.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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