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TTC39C
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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:143.2 nTPM
GTEx:143.2 nTPM
FANTOM5:66.7 Scaled Tags Per Million
Pig:39.1 nTPM
Mouse:46.2 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 143.2
GTEx sample id Sample description nTPM
Retina
Average nTPM: 143.2
Samples: 105

Max nTPM: 273.2
Min nTPM: 54.8
Std nTPM: 46.0
Median nTPM:
32_1 67 years, male 273.2
415_1 77 years, female 245.4
229_1 69 years, female 239.7
162_1 79 years, female 230.0
347_1 72 years, male 229.8
81_1 67 years, male 229.3
237_1 82 years, male 218.0
217_1 76 years, male 213.9
126_1 63 years, male 213.4
389_1 86 years, female 211.8
466_1 57 years, female 211.7
447_1 81 years, male 208.2
266_1 85 years, male 207.7
352_1 62 years, male 206.9
35_1 74 years, female 202.9
375_1 74 years, female 199.1
349_1 83 years, male 197.3
142_1 61 years, female 194.5
315_1 62 years, female 191.6
99_1 64 years, male 186.2
379_1 60 years, male 184.5
499_1 55 years, female 183.7
324_1 76 years, male 182.9
6_1 73 years, female 182.5
265_1 87 years, male 181.9
172_1 72 years, female 181.0
396_1 62 years, male 179.3
153_1 70 years, female 173.6
386_1 76 years, male 172.3
43_1 64 years, female 172.1
414_1 84 years, female 167.6
9_1 66 years, female 165.6
405_1 91 years, male 157.1
286_1 68 years, female 155.4
119_1 70 years, female 155.2
319_1 81 years, male 154.2
355_1 70 years, female 152.7
316_1 62 years, male 152.4
115_1 83 years, male 150.6
490_1 67 years, female 149.6
335_1 73 years, female 148.2
517_1 88 years, male 146.5
480_1 63 years, male 146.4
149_1 88 years, male 146.0
189_1 76 years, male 145.9
317_1 60 years, male 145.3
354_1 81 years, female 144.0
526_1 61 years, male 144.0
348_1 84 years, male 142.5
491_1 89 years, female 141.7
313_1 79 years, female 137.5
321_1 62 years, female 137.0
42_1 85 years, male 134.2
394_1 75 years, female 134.2
251_1 78 years, male 132.3
264_1 73 years, female 131.8
404_1 82 years, female 131.3
318_1 68 years, male 130.6
452_1 88 years, female 130.0
503_1 68 years, male 129.1
356_1 87 years, female 129.0
246_1 77 years, male 127.9
468_1 89 years, male 126.8
413_1 59 years, female 126.7
117_1 61 years, male 126.0
288_1 66 years, female 125.4
376_1 75 years, female 125.4
425_1 59 years, female 124.3
17_1 71 years, male 121.0
377_1 82 years, female 119.3
137_1 83 years, male 119.0
384_1 83 years, male 118.5
218_1 71 years, female 116.9
254_1 77 years, female 115.0
18_1 88 years, male 110.5
518_1 75 years, female 109.9
406_1 79 years, male 109.7
109_1 81 years, female 109.1
506_1 65 years, male 107.9
145_1 84 years, male 107.6
120_1 70 years, female 107.1
320_1 89 years, female 106.3
291_1 76 years, male 106.1
311_1 78 years, male 104.8
139_1 64 years, female 103.5
314_1 67 years, male 101.9
243_1 75 years, male 100.6
501_1 88 years, male 100.1
292_1 71 years, male 97.9
177_1 74 years, male 96.6
4_1 88 years, female 96.4
353_1 82 years, female 95.7
89_1 63 years, male 94.9
350_1 84 years, female 92.5
351_1 91 years, male 91.0
163_1 78 years, male 83.2
495_1 57 years, female 79.1
173_1 67 years, male 78.2
307_1 66 years, female 76.5
295_1 61 years, female 75.6
308_1 70 years, female 74.9
2_1 77 years, female 73.4
293_1 68 years, female 63.5
322_1 76 years, male 58.9
41_1 94 years, female 54.8
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 66.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 66.7
FF:10030-101E3 24-65 years, mixed 66.7

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 39.1
Pig sample Sample description nTPM
Retina
nTPM: 39.1
Samples: 4

Max nTPM: 48.0
Min nTPM: 32.3
Sample A Female 38.9
Sample B Female 32.3
Sample C Male 48.0
Sample D Male 37.0

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 46.2
Mouse sample Sample description nTPM
Retina
nTPM: 46.2
Samples: 4

Max nTPM: 51.3
Min nTPM: 38.2
Sample A Male 45.4
Sample B Male 51.3
Sample C Female 38.2
Sample D Female 49.7

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by the Knut & Alice Wallenberg Foundation.