MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:30.1 nTPM
HPA:30.1 nTPM
GTEx:28.5 nTPM
FANTOM5:105.3 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.2
1870 Female, age 42, unknown 31.5
2411 Female, age 72, unknown 30.7
2586 Male, age 75, left hemisphere 28.8
1830 Male, age 51, unknown 28.5
1833 Male, age 53, unknown 27.9
2019 Male, age 18, unknown 27.4
2666 Male, age 74, left hemisphere 25.8
2828 Female, age 72, unknown 24.2
1827 Male, age 72, unknown 23.8
2219 Male, age 76, both hemispheres 23.4
Dorsal raphe nucleus
nTPM: 24.1
2750 Male, age 76, both hemispheres 28.1
2016 Female, age 72, unknown 25.1
1828 Male, age 53, unknown 23.5
2298 Female, age 72, unknown 23.3
2047 Male, age 72, unknown 20.8
Inferior colliculus
nTPM: 26.3
2097 Female, age 72, unknown 26.8
1890 Male, age 53, unknown 26.7
1848 Female, age 42, unknown 26.6
2849 Male, age 72, unknown 25.1
Median raphe nucleus
nTPM: 23.2
2220 Male, age 76, midline 23.2
Pedunculopontine tegmental nucleus
nTPM: 25.5
2334 Male, age 80, both hemispheres 26.6
1921 Female, age 85, both hemispheres 25.6
2338 Male, age 61, both hemispheres 24.2
Periaquaductal grey, anterior
nTPM: 23.8
2502 Female, age 75, unknown 25.8
1947 Male, age 18, unknown 23.2
1795 Male, age 51, unknown 22.4
Periaquaductal grey, dorsal
nTPM: 23.6
2464 Female, age 72, unknown 24.5
1831 Male, age 72, unknown 24.2
1840 Male, age 53, unknown 23.2
2850 Male, age 76, both hemispheres 22.4
Periaquaductal grey, lateral
nTPM: 22.4
2053 Male, age 18, unknown 25.0
2140 Male, age 76, both hemispheres 21.1
2272 Male, age 74, both hemispheres 21.1
Pretectal area
nTPM: 24.0
1815 Male, age 53, unknown 27.5
2007 Male, age 72, unknown 26.2
2407 Male, age 75, both hemispheres 25.2
1817 Female, age 42, unknown 24.6
2316 Male, age 76, right hemisphere 24.1
2224 Female, age 72, unknown 23.8
2825 Male, age 18, unknown 23.4
2667 Female, age 75, unknown 22.6
1816 Male, age 51, unknown 22.3
2273 Male, age 74, both hemispheres 22.2
1944 Female, age 72, unknown 21.9
Red nucleus
nTPM: 30.1
1821 Female, age 72, unknown 33.8
1865 Male, age 51, unknown 32.2
1904 Male, age 53, unknown 32.1
2503 Female, age 72, unknown 30.3
2588 Male, age 74, left hemisphere 30.3
2227 Male, age 72, unknown 30.1
2769 Male, age 72, unknown 29.8
1954 Female, age 42, unknown 29.3
2785 Male, age 18, unknown 28.9
2725 Female, age 75, unknown 28.3
2823 Male, age 76, right hemisphere 28.1
2584 Male, age 75, left hemisphere 28.0
Substantia nigra
nTPM: 25.3
2583 Male, age 75, right hemisphere 29.7
2241 Male, age 72, unknown 27.3
1889 Female, age 72, unknown 26.7
2699 Male, age 18, unknown 25.6
2665 Male, age 74, both hemispheres 25.2
1851 Male, age 51, unknown 25.0
2409 Female, age 72, unknown 24.9
2590 Female, age 75, unknown 24.9
1916 Female, age 42, unknown 21.8
1941 Male, age 53, unknown 21.8
Superior colliculus
nTPM: 26.8
1913 Female, age 42, unknown 32.9
1995 Male, age 72, unknown 30.3
2587 Male, age 74, left hemisphere 28.7
2668 Female, age 75, unknown 27.6
1895 Male, age 76, right hemisphere 27.3
1839 Male, age 51, unknown 26.6
1796 Male, age 53, unknown 24.8
2261 Male, age 18, unknown 24.7
2664 Male, age 75, both hemispheres 23.2
2087 Female, age 72, unknown 21.4
Ventral tegmental area
nTPM: 25.5
2223 Female, age 72, unknown 27.8
2410 Female, age 72, unknown 26.9
1942 Male, age 51, unknown 25.8
2021 Male, age 53, unknown 25.4
2218 Male, age 76, both hemispheres 23.9
1915 Female, age 42, unknown 22.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.5
Samples: 139

Max nTPM: 58.1
Min nTPM: 13.4
Std nTPM: 9.2
Median nTPM: 26.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 58.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 53.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 53.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 49.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 47.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 47.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 46.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 45.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 44.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 44.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 44.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 105.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 105.3
FF:10158-103A5 76 years, female 105.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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