MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1644.5 nTPM
HPA:1644.5 nTPM
GTEx:727.7 nTPM
FANTOM5:758.5 Scaled Tags Per Million
Mouse:139.7 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1644.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1515.3
2828 Female, age 72, unknown 1829.7
1870 Female, age 42, unknown 1581.8
2586 Male, age 75, left hemisphere 1554.6
1827 Male, age 72, unknown 1550.2
2666 Male, age 74, left hemisphere 1510.9
1830 Male, age 51, unknown 1457.7
1833 Male, age 53, unknown 1435.5
2019 Male, age 18, unknown 1425.4
2411 Female, age 72, unknown 1415.6
2219 Male, age 76, both hemispheres 1391.6
Dorsal raphe nucleus
nTPM: 1495.0
2016 Female, age 72, unknown 1644.6
1828 Male, age 53, unknown 1521.2
2047 Male, age 72, unknown 1450.8
2750 Male, age 76, both hemispheres 1438.2
2298 Female, age 72, unknown 1420.3
Inferior colliculus
nTPM: 1462.9
1848 Female, age 42, unknown 1534.5
2849 Male, age 72, unknown 1502.8
1890 Male, age 53, unknown 1411.0
2097 Female, age 72, unknown 1403.3
Median raphe nucleus
nTPM: 1472.4
2220 Male, age 76, midline 1472.4
Pedunculopontine tegmental nucleus
nTPM: 1417.3
2334 Male, age 80, both hemispheres 1435.6
2338 Male, age 61, both hemispheres 1414.3
1921 Female, age 85, both hemispheres 1401.9
Periaquaductal grey, anterior
nTPM: 1524.9
1795 Male, age 51, unknown 1592.3
2502 Female, age 75, unknown 1546.3
1947 Male, age 18, unknown 1436.1
Periaquaductal grey, dorsal
nTPM: 1558.7
1831 Male, age 72, unknown 1700.8
2850 Male, age 76, both hemispheres 1589.4
1840 Male, age 53, unknown 1524.3
2464 Female, age 72, unknown 1420.4
Periaquaductal grey, lateral
nTPM: 1641.6
2053 Male, age 18, unknown 1782.8
2272 Male, age 74, both hemispheres 1575.0
2140 Male, age 76, both hemispheres 1567.0
Pretectal area
nTPM: 1594.8
2407 Male, age 75, both hemispheres 1777.7
2316 Male, age 76, right hemisphere 1759.4
2273 Male, age 74, both hemispheres 1634.9
2825 Male, age 18, unknown 1617.0
2224 Female, age 72, unknown 1597.8
1815 Male, age 53, unknown 1575.6
2667 Female, age 75, unknown 1566.2
1816 Male, age 51, unknown 1563.3
1944 Female, age 72, unknown 1560.4
1817 Female, age 42, unknown 1475.7
2007 Male, age 72, unknown 1414.9
Red nucleus
nTPM: 1474.6
2503 Female, age 72, unknown 1560.5
2725 Female, age 75, unknown 1522.7
2823 Male, age 76, right hemisphere 1507.6
2769 Male, age 72, unknown 1481.5
2227 Male, age 72, unknown 1475.8
2588 Male, age 74, left hemisphere 1474.3
2584 Male, age 75, left hemisphere 1461.7
1865 Male, age 51, unknown 1459.2
2785 Male, age 18, unknown 1451.1
1821 Female, age 72, unknown 1447.6
1904 Male, age 53, unknown 1446.3
1954 Female, age 42, unknown 1406.6
Substantia nigra
nTPM: 1566.0
2699 Male, age 18, unknown 1801.7
1851 Male, age 51, unknown 1658.9
2590 Female, age 75, unknown 1585.6
2583 Male, age 75, right hemisphere 1573.9
2409 Female, age 72, unknown 1561.5
2665 Male, age 74, both hemispheres 1543.4
1916 Female, age 42, unknown 1518.0
1941 Male, age 53, unknown 1504.7
1889 Female, age 72, unknown 1466.5
2241 Male, age 72, unknown 1446.1
Superior colliculus
nTPM: 1644.5
1913 Female, age 42, unknown 1836.0
2664 Male, age 75, both hemispheres 1815.5
1995 Male, age 72, unknown 1776.1
1796 Male, age 53, unknown 1739.8
2087 Female, age 72, unknown 1634.9
2587 Male, age 74, left hemisphere 1590.1
1839 Male, age 51, unknown 1574.2
2261 Male, age 18, unknown 1549.6
2668 Female, age 75, unknown 1491.3
1895 Male, age 76, right hemisphere 1437.9
Ventral tegmental area
nTPM: 1582.3
2021 Male, age 53, unknown 1752.0
1915 Female, age 42, unknown 1683.3
2223 Female, age 72, unknown 1550.6
1942 Male, age 51, unknown 1511.1
2218 Male, age 76, both hemispheres 1498.7
2410 Female, age 72, unknown 1498.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 727.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 727.7
Samples: 139

Max nTPM: 2841.7
Min nTPM: 103.7
Std nTPM: 467.9
Median nTPM: 620.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2841.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 2250.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2203.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 2033.1
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 1647.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1625.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 1605.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1600.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 1590.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 1482.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 1456.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 758.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 758.5
FF:10158-103A5 76 years, female 758.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 139.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 139.7
Samples: 4

Max nTPM: 172.8
Min nTPM: 109.3
Sample A Male 132.0
Sample B Male 109.3
Sample C Female 172.8
Sample D Female 144.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
74431465 Antisense, RP_060207_02_A08, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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