MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:95.1 nTPM
HPA:95.1 nTPM
GTEx:84.7 nTPM
FANTOM5:116.0 Scaled Tags Per Million
Pig:30.5 nTPM
Mouse:74.5 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 95.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 83.8
2586 Male, age 75, left hemisphere 96.0
2828 Female, age 72, unknown 95.9
1827 Male, age 72, unknown 87.3
1870 Female, age 42, unknown 86.3
2666 Male, age 74, left hemisphere 85.2
2411 Female, age 72, unknown 82.1
1830 Male, age 51, unknown 80.2
1833 Male, age 53, unknown 78.5
2219 Male, age 76, both hemispheres 73.9
2019 Male, age 18, unknown 72.5
Dorsal raphe nucleus
nTPM: 89.1
1828 Male, age 53, unknown 93.7
2016 Female, age 72, unknown 93.2
2047 Male, age 72, unknown 92.8
2298 Female, age 72, unknown 84.7
2750 Male, age 76, both hemispheres 81.1
Inferior colliculus
nTPM: 95.1
1848 Female, age 42, unknown 103.7
2097 Female, age 72, unknown 92.7
1890 Male, age 53, unknown 92.6
2849 Male, age 72, unknown 91.5
Median raphe nucleus
nTPM: 77.8
2220 Male, age 76, midline 77.8
Pedunculopontine tegmental nucleus
nTPM: 83.5
2334 Male, age 80, both hemispheres 84.0
2338 Male, age 61, both hemispheres 83.9
1921 Female, age 85, both hemispheres 82.5
Periaquaductal grey, anterior
nTPM: 87.2
2502 Female, age 75, unknown 90.8
1795 Male, age 51, unknown 85.4
1947 Male, age 18, unknown 85.3
Periaquaductal grey, dorsal
nTPM: 89.7
1840 Male, age 53, unknown 95.1
2464 Female, age 72, unknown 91.5
2850 Male, age 76, both hemispheres 87.0
1831 Male, age 72, unknown 85.0
Periaquaductal grey, lateral
nTPM: 84.1
2053 Male, age 18, unknown 93.4
2140 Male, age 76, both hemispheres 86.2
2272 Male, age 74, both hemispheres 72.7
Pretectal area
nTPM: 85.2
1817 Female, age 42, unknown 91.8
1944 Female, age 72, unknown 90.2
2825 Male, age 18, unknown 89.5
1816 Male, age 51, unknown 89.0
2667 Female, age 75, unknown 87.4
2316 Male, age 76, right hemisphere 86.4
2224 Female, age 72, unknown 85.3
1815 Male, age 53, unknown 83.9
2407 Male, age 75, both hemispheres 80.7
2007 Male, age 72, unknown 77.5
2273 Male, age 74, both hemispheres 75.2
Red nucleus
nTPM: 86.2
2503 Female, age 72, unknown 94.5
1954 Female, age 42, unknown 92.4
1821 Female, age 72, unknown 91.9
2227 Male, age 72, unknown 91.1
2769 Male, age 72, unknown 89.7
2725 Female, age 75, unknown 86.1
2588 Male, age 74, left hemisphere 85.6
2823 Male, age 76, right hemisphere 85.2
1865 Male, age 51, unknown 83.8
1904 Male, age 53, unknown 81.7
2584 Male, age 75, left hemisphere 79.5
2785 Male, age 18, unknown 72.9
Substantia nigra
nTPM: 90.8
2699 Male, age 18, unknown 115.4
1916 Female, age 42, unknown 92.7
2241 Male, age 72, unknown 90.0
1889 Female, age 72, unknown 89.2
1851 Male, age 51, unknown 89.0
1941 Male, age 53, unknown 88.6
2583 Male, age 75, right hemisphere 87.3
2665 Male, age 74, both hemispheres 87.3
2409 Female, age 72, unknown 86.0
2590 Female, age 75, unknown 82.3
Superior colliculus
nTPM: 86.7
2664 Male, age 75, both hemispheres 95.9
1839 Male, age 51, unknown 90.6
2087 Female, age 72, unknown 89.7
2668 Female, age 75, unknown 87.7
2587 Male, age 74, left hemisphere 86.3
1796 Male, age 53, unknown 86.1
2261 Male, age 18, unknown 85.7
1995 Male, age 72, unknown 85.0
1913 Female, age 42, unknown 80.9
1895 Male, age 76, right hemisphere 79.1
Ventral tegmental area
nTPM: 86.6
2021 Male, age 53, unknown 91.5
1915 Female, age 42, unknown 89.0
2410 Female, age 72, unknown 87.4
1942 Male, age 51, unknown 86.2
2218 Male, age 76, both hemispheres 82.9
2223 Female, age 72, unknown 82.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 84.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 84.7
Samples: 139

Max nTPM: 163.2
Min nTPM: 23.0
Std nTPM: 31.1
Median nTPM: 81.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 163.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 157.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 154.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 152.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 152.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 145.3
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 143.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 140.2
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 138.4
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 136.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 136.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 116.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 116.0
FF:10158-103A5 76 years, female 116.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 30.5
Pig sample Sample description nTPM
Midbrain
nTPM: 26.3
Samples: 4

Max nTPM: 30.2
Min nTPM: 24.2
Sample A Female 26.5
Sample B Female 30.2
Sample C Male 24.4
Sample D Male 24.2
Periaqueductal gray
nTPM: 27.8
Samples: 3

Max nTPM: 31.7
Min nTPM: 25.1
Sample B Female 31.7
Sample C Male 25.1
Sample D Male 26.7
Substantia nigra
nTPM: 30.5
Samples: 4

Max nTPM: 35.9
Min nTPM: 25.7
Sample A Female 25.7
Sample B Female 31.0
Sample C Male 29.4
Sample D Male 35.9
Superior colliculi
nTPM: 25.1
Samples: 4

Max nTPM: 26.7
Min nTPM: 24.2
Sample A Female 24.4
Sample B Female 25.2
Sample C Male 24.2
Sample D Male 26.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 74.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 74.5
Samples: 4

Max nTPM: 79.5
Min nTPM: 69.5
Sample A Male 74.4
Sample B Male 69.5
Sample C Female 79.5
Sample D Female 74.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
79544800 Antisense, RP_071018_01_C09, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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