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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:106.0 nTPM
HPA:106.0 nTPM
GTEx:138.2 nTPM
FANTOM5:302.5 Scaled Tags Per Million
Pig:101.1 nTPM
Mouse:324.0 nTPM
Allen mouse:20.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 106.0
Sample id Sample description nTPM
Amygdala
nTPM: 25.1
2517 Female, age 94, left hemisphere 72.6
1987 Female, age 91, left hemisphere 45.1
2814 Male, age 76, right hemisphere 7.8
2514 Male, age 75, right hemisphere 0.1
2695 Female, age 67, right hemisphere 0.0
Basal amygdala
nTPM: 102.7
2685 Female, age 94, left hemisphere 171.7
2243 Female, age 91, right hemisphere 164.4
2110 Male, age 80, left hemisphere 132.5
2827 Female, age 67, right hemisphere 77.4
1955 Male, age 76, both hemispheres 39.4
2609 Male, age 75, right hemisphere 30.6
Central amygdala
nTPM: 53.0
2826 Female, age 94, left hemisphere 129.6
2239 Male, age 80, left hemisphere 88.2
2701 Female, age 91, right hemisphere 42.4
2515 Male, age 75, right hemisphere 2.7
1905 Male, age 76, both hemispheres 2.3
Corticomedial amygdala
nTPM: 99.6
2829 Male, age 80, left hemisphere 164.3
2242 Female, age 91, right hemisphere 160.1
2535 Female, age 67, right hemisphere 125.9
2429 Female, age 94, left hemisphere 100.5
2240 Male, age 76, both hemispheres 28.0
2428 Male, age 75, right hemisphere 19.0
Lateral amygdala
nTPM: 60.1
2534 Female, age 94, left hemisphere 181.7
2256 Male, age 80, left hemisphere 91.1
2255 Female, age 91, right hemisphere 69.9
1883 Male, age 76, both hemispheres 11.8
2830 Female, age 67, right hemisphere 6.3
2516 Male, age 75, right hemisphere 0.0
Stria terminalis, bed nucleus
nTPM: 106.0
2486 Female, age 94, both hemispheres 151.7
1974 Female, age 91, both hemispheres 142.1
2201 Male, age 74, unknown 24.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 138.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 138.2
Samples: 152

Max nTPM: 449.7
Min nTPM: 8.1
Std nTPM: 81.8
Median nTPM: 122.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 449.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 444.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 367.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 360.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 310.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 310.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 292.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 290.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 285.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 284.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 277.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 268.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 258.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 255.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 244.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 244.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 242.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 241.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 229.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 224.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 221.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 221.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 217.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 216.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 211.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 211.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 206.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 205.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 204.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 202.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 200.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 198.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 195.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 189.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 188.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 186.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 186.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 185.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 185.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 184.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 183.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 174.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 172.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 167.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 167.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 164.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 163.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 163.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 163.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 160.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 160.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 159.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 158.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 158.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 155.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 153.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 151.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 151.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 151.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 150.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 146.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 145.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 141.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 140.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 138.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 135.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 134.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 134.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 134.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 132.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 131.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 130.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 128.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 127.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 123.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 122.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 121.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 120.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 115.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 114.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 114.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 113.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 112.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 112.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 112.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 111.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 111.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 108.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 106.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 105.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 103.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 102.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 101.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 100.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 99.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 98.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 96.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 96.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 96.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 95.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 91.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 89.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 87.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 84.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 84.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 82.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 81.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 80.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 78.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 78.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 77.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 77.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 77.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 77.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 74.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 73.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 70.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 70.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 70.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 69.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 69.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 68.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 68.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 68.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 67.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 67.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 66.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 66.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 62.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 61.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 61.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 60.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 59.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 58.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 58.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 57.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 54.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 54.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 54.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 52.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 50.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 48.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 39.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 39.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 35.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 33.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 30.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 26.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 15.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 12.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 9.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 8.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 302.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 302.5
FF:10151-102I7 76 years, female 302.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 101.1
Pig sample Sample description nTPM
Amygdala
nTPM: 101.1
Samples: 4

Max nTPM: 164.0
Min nTPM: 57.9
Sample A Female 164.0
Sample B Female 57.9
Sample C Male 82.9
Sample D Male 99.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 324.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 324.1
Samples: 4

Max nTPM: 335.5
Min nTPM: 306.6
Sample A Male 332.8
Sample B Male 321.3
Sample C Female 335.5
Sample D Female 306.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 20.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 20.7
71608455 Antisense, RP_050927_01_G05, Mouse strain C57BL/6J (56 days, male) 21.4
544328 Antisense, RP_040625_01_H06, Mouse strain C57BL/6J (56 days, male) 20.0

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