MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:64.8 nTPM
HPA:64.8 nTPM
GTEx:76.0 nTPM
FANTOM5:128.2 Scaled Tags Per Million
Pig:70.7 nTPM
Mouse:61.4 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 64.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.4
1870 Female, age 42, unknown 67.0
2411 Female, age 72, unknown 65.3
2019 Male, age 18, unknown 64.7
1830 Male, age 51, unknown 62.1
1833 Male, age 53, unknown 59.8
2828 Female, age 72, unknown 57.2
1827 Male, age 72, unknown 55.0
2219 Male, age 76, both hemispheres 55.0
2666 Male, age 74, left hemisphere 54.7
2586 Male, age 75, left hemisphere 53.6
Dorsal raphe nucleus
nTPM: 58.9
2750 Male, age 76, both hemispheres 67.0
1828 Male, age 53, unknown 58.3
2298 Female, age 72, unknown 57.5
2016 Female, age 72, unknown 56.8
2047 Male, age 72, unknown 55.0
Inferior colliculus
nTPM: 56.0
2097 Female, age 72, unknown 57.9
1848 Female, age 42, unknown 57.0
1890 Male, age 53, unknown 56.8
2849 Male, age 72, unknown 52.3
Median raphe nucleus
nTPM: 59.1
2220 Male, age 76, midline 59.1
Pedunculopontine tegmental nucleus
nTPM: 59.3
2334 Male, age 80, both hemispheres 61.3
1921 Female, age 85, both hemispheres 59.2
2338 Male, age 61, both hemispheres 57.2
Periaquaductal grey, anterior
nTPM: 57.2
2502 Female, age 75, unknown 61.5
1947 Male, age 18, unknown 57.3
1795 Male, age 51, unknown 52.9
Periaquaductal grey, dorsal
nTPM: 54.1
2464 Female, age 72, unknown 55.7
1831 Male, age 72, unknown 54.6
1840 Male, age 53, unknown 53.4
2850 Male, age 76, both hemispheres 52.5
Periaquaductal grey, lateral
nTPM: 54.3
2053 Male, age 18, unknown 55.3
2140 Male, age 76, both hemispheres 53.9
2272 Male, age 74, both hemispheres 53.9
Pretectal area
nTPM: 56.1
2316 Male, age 76, right hemisphere 59.7
1815 Male, age 53, unknown 58.1
1817 Female, age 42, unknown 57.6
2007 Male, age 72, unknown 57.3
2273 Male, age 74, both hemispheres 56.5
2825 Male, age 18, unknown 55.7
2224 Female, age 72, unknown 55.5
2667 Female, age 75, unknown 55.2
2407 Male, age 75, both hemispheres 54.6
1944 Female, age 72, unknown 53.6
1816 Male, age 51, unknown 53.0
Red nucleus
nTPM: 64.8
1821 Female, age 72, unknown 74.3
1865 Male, age 51, unknown 73.0
1904 Male, age 53, unknown 70.4
2769 Male, age 72, unknown 68.1
2227 Male, age 72, unknown 66.6
1954 Female, age 42, unknown 65.5
2823 Male, age 76, right hemisphere 64.3
2785 Male, age 18, unknown 63.9
2503 Female, age 72, unknown 63.1
2725 Female, age 75, unknown 56.8
2588 Male, age 74, left hemisphere 56.4
2584 Male, age 75, left hemisphere 55.2
Substantia nigra
nTPM: 58.6
1851 Male, age 51, unknown 62.8
2241 Male, age 72, unknown 61.5
1889 Female, age 72, unknown 61.0
2409 Female, age 72, unknown 59.0
2590 Female, age 75, unknown 58.3
1916 Female, age 42, unknown 57.0
1941 Male, age 53, unknown 57.0
2665 Male, age 74, both hemispheres 56.7
2583 Male, age 75, right hemisphere 56.3
2699 Male, age 18, unknown 56.1
Superior colliculus
nTPM: 57.8
1913 Female, age 42, unknown 63.9
1895 Male, age 76, right hemisphere 61.0
1995 Male, age 72, unknown 60.6
2587 Male, age 74, left hemisphere 60.4
2668 Female, age 75, unknown 60.0
1839 Male, age 51, unknown 57.4
1796 Male, age 53, unknown 54.7
2261 Male, age 18, unknown 53.9
2087 Female, age 72, unknown 53.0
2664 Male, age 75, both hemispheres 53.0
Ventral tegmental area
nTPM: 62.0
2223 Female, age 72, unknown 75.8
2410 Female, age 72, unknown 65.5
1915 Female, age 42, unknown 58.0
1942 Male, age 51, unknown 57.7
2021 Male, age 53, unknown 57.6
2218 Male, age 76, both hemispheres 57.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 76.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 76.0
Samples: 139

Max nTPM: 171.1
Min nTPM: 42.9
Std nTPM: 23.1
Median nTPM: 71.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 171.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 143.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 137.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 129.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 122.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 119.3
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 115.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 114.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 113.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 112.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 112.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 128.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 128.2
FF:10158-103A5 76 years, female 128.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 70.7
Pig sample Sample description nTPM
Midbrain
nTPM: 70.7
Samples: 4

Max nTPM: 121.9
Min nTPM: 47.0
Sample A Female 121.9
Sample B Female 65.6
Sample C Male 47.0
Sample D Male 48.3
Periaqueductal gray
nTPM: 51.2
Samples: 3

Max nTPM: 55.2
Min nTPM: 46.0
Sample B Female 55.2
Sample C Male 46.0
Sample D Male 52.3
Substantia nigra
nTPM: 67.5
Samples: 4

Max nTPM: 84.5
Min nTPM: 52.9
Sample A Female 75.3
Sample B Female 52.9
Sample C Male 57.3
Sample D Male 84.5
Superior colliculi
nTPM: 58.7
Samples: 4

Max nTPM: 70.8
Min nTPM: 37.1
Sample A Female 70.8
Sample B Female 37.1
Sample C Male 57.9
Sample D Male 68.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 61.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 61.4
Samples: 4

Max nTPM: 62.7
Min nTPM: 60.5
Sample A Male 62.7
Sample B Male 61.3
Sample C Female 61.2
Sample D Female 60.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
2227 Antisense, RP_040428_01_B11, Mouse strain C57BL/6J (56 days, male) 1.2
2226 Antisense, RP_040428_01_B11, Mouse strain C57BL/6J (56 days, male) 0.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.