BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:1.4 nTPM
HPA:1.4 nTPM
GTEx:1.3 nTPM
FANTOM5:3.8 Scaled Tags Per Million
Pig:2.4 nTPM
Mouse:3.0 nTPM
Allen mouse:0.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA005974
Glial cells Not detected
Neuronal cells Low


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 1.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.6
1781 Male, age 74, unknown 0.7
2481 Female, age 94, left hemisphere 0.7
1854 Male, age 80, left hemisphere 0.6
1857 Female, age 85, left hemisphere 0.6
2846 Female, age 79, unknown 0.6
2288 Male, age 75, left hemisphere 0.5
2289 Male, age 61, right hemisphere 0.5
2290 Female, age 72, unknown 0.5
Claustrum
nTPM: 0.6
2292 Female, age 85, both hemispheres 0.7
1956 Male, age 74, unknown 0.6
2196 Female, age 79, unknown 0.6
2284 Female, age 91, both hemispheres 0.6
2392 Female, age 94, both hemispheres 0.6
2491 Male, age 75, both hemispheres 0.6
2645 Female, age 72, unknown 0.6
2198 Male, age 80, both hemispheres 0.5
2568 Male, age 61, both hemispheres 0.5
Globus pallidus, externus
nTPM: 1.2
1996 Male, age 80, right hemisphere 1.9
2567 Female, age 72, unknown 1.3
2395 Male, age 75, both hemispheres 1.0
2646 Male, age 61, right hemisphere 0.9
2772 Female, age 79, unknown 0.8
Globus pallidus, internus
nTPM: 1.4
2037 Male, age 80, right hemisphere 1.9
2778 Female, age 91, both hemispheres 1.8
2111 Female, age 85, right hemisphere 1.7
2566 Female, age 72, unknown 1.5
1818 Male, age 74, unknown 1.1
2287 Male, age 75, right hemisphere 1.1
2483 Female, age 94, right hemisphere 0.9
Nucleus accumbens
nTPM: 0.5
2732 Male, age 80, right hemisphere 0.8
1806 Female, age 85, left hemisphere 0.6
1783 Male, age 74, unknown 0.5
1856 Female, age 91, right hemisphere 0.5
2391 Female, age 94, left hemisphere 0.5
2698 Female, age 72, unknown 0.5
2824 Male, age 61, right hemisphere 0.5
2286 Male, age 75, left hemisphere 0.4
Nucleus basalis of Meynert
nTPM: 0.8
2569 Male, age 61, both hemispheres 1.4
2484 Female, age 94, left hemisphere 0.7
2821 Male, age 75, both hemispheres 0.7
2393 Male, age 80, right hemisphere 0.4
Nucleus of the diagonal band
nTPM: 0.5
1812 Female, age 91, both hemispheres 0.8
1979 Male, age 74, unknown 0.5
2195 Female, age 85, both hemispheres 0.5
2029 Male, age 61, right hemisphere 0.4
2775 Male, age 80, right hemisphere 0.4
Olfactory tubercle
nTPM: 0.5
1998 Female, age 91, both hemispheres 0.6
2487 Female, age 94, left hemisphere 0.6
1846 Male, age 80, right hemisphere 0.5
2856 Male, age 75, right hemisphere 0.5
Putamen
nTPM: 0.5
2482 Female, age 94, left hemisphere 0.7
2647 Male, age 75, left hemisphere 0.6
1829 Male, age 74, unknown 0.5
1937 Female, age 91, right hemisphere 0.5
2466 Female, age 79, unknown 0.5
2489 Female, age 72, unknown 0.5
1838 Male, age 80, right hemisphere 0.4
Septal nuclei
nTPM: 0.5
1960 Male, age 74, unknown 0.6
2009 Female, age 91, both hemispheres 0.6
2199 Male, age 80, right hemisphere 0.6
2031 Female, age 72, unknown 0.5
2059 Female, age 85, both hemispheres 0.5
2394 Male, age 61, left hemisphere 0.5
2629 Female, age 94, right hemisphere 0.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 1.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 0.9
Samples: 246

Max nTPM: 6.8
Min nTPM: 0.0
Std nTPM: 0.8
Median nTPM: 0.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 6.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 4.8
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 4.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 4.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 4.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 3.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 3.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 3.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 3.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 3.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 2.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 0.9
Samples: 246

Max nTPM: 8.1
Min nTPM: 0.0
Std nTPM: 0.9
Median nTPM: 0.6
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 8.1
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 5.0
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 4.7
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 4.7
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 4.2
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 3.8
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 3.6
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 3.4
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 3.3
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 3.3
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 3.2
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Brain - Putamen (basal ganglia)
Average nTPM: 1.3
Samples: 205

Max nTPM: 10.3
Min nTPM: 0.0
Std nTPM: 1.5
Median nTPM: 0.9
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 10.3
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 9.0
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 7.8
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 7.0
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 6.6
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 6.4
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 5.8
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 5.7
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 5.0
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 4.7
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 4.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 3.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.7
FF:10164-103B2 76 years, female 0.7
Globus pallidus
Scaled Tags Per Million: 3.8
FF:10175-103C4 60 years, female 4.7
FF:10161-103A8 76 years, female 2.8
Nucleus accumbens
Scaled Tags Per Million: 0.5
FF:10037-101F1 23-56 years, mixed 0.5
Putamen
Scaled Tags Per Million: 0.2
FF:10176-103C5 60 years, female 0.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 2.4
Pig sample Sample description nTPM
Caudate
nTPM: 2.5
Samples: 4

Max nTPM: 2.8
Min nTPM: 2.1
Sample A Female 2.6
Sample B Female 2.4
Sample C Male 2.1
Sample D Male 2.8
Putamen
nTPM: 2.2
Samples: 4

Max nTPM: 2.5
Min nTPM: 1.6
Sample A Female 2.4
Sample B Female 2.5
Sample C Male 1.6
Sample D Male 2.2
Septum
nTPM: 1.9
Samples: 4

Max nTPM: 2.2
Min nTPM: 1.5
Sample A Female 1.9
Sample B Female 2.2
Sample C Male 1.5
Sample D Male 2.0
Ventral pallidum
nTPM: 2.2
Samples: 4

Max nTPM: 2.5
Min nTPM: 1.8
Sample A Female 2.3
Sample B Female 2.0
Sample C Male 1.8
Sample D Male 2.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 3.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 1.9
Samples: 4

Max nTPM: 2.7
Min nTPM: 1.4
Sample A Male 2.7
Sample B Male 1.4
Sample C Female 1.4
Sample D Female 2.1
Septum
nTPM: 3.0
Samples: 4

Max nTPM: 4.7
Min nTPM: 2.1
Sample A Male 2.1
Sample B Male 2.8
Sample C Female 4.7
Sample D Female 2.5
Ventral forebrain
nTPM: 1.3
Samples: 4

Max nTPM: 2.4
Min nTPM: 0.8
Sample A Male 0.9
Sample B Male 0.8
Sample C Female 0.9
Sample D Female 2.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.3
75828193 Antisense, RP_060601_01_G05, Mouse strain C57BL/6J (56 days, male) 0.3
Pallidum
Expression energy: 0.2
75828193 Antisense, RP_060601_01_G05, Mouse strain C57BL/6J (56 days, male) 0.2

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