BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:18.7 nTPM
HPA:18.7 nTPM
GTEx:35.5 nTPM
FANTOM5:95.3 Scaled Tags Per Million
Mouse:73.4 nTPM
Allen mouse:15.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA014101
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 18.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 13.3
2846 Female, age 79, unknown 22.0
2289 Male, age 61, right hemisphere 16.6
1857 Female, age 85, left hemisphere 15.4
2290 Female, age 72, unknown 15.0
1781 Male, age 74, unknown 13.0
1854 Male, age 80, left hemisphere 12.6
2288 Male, age 75, left hemisphere 8.4
2481 Female, age 94, left hemisphere 3.7
Claustrum
nTPM: 14.2
2568 Male, age 61, both hemispheres 18.1
2196 Female, age 79, unknown 17.9
2645 Female, age 72, unknown 17.8
1956 Male, age 74, unknown 16.7
2198 Male, age 80, both hemispheres 15.5
2284 Female, age 91, both hemispheres 14.2
2491 Male, age 75, both hemispheres 13.6
2392 Female, age 94, both hemispheres 8.7
2292 Female, age 85, both hemispheres 5.5
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 15.5
2824 Male, age 61, right hemisphere 29.0
1856 Female, age 91, right hemisphere 28.1
1783 Male, age 74, unknown 24.9
1806 Female, age 85, left hemisphere 17.0
2698 Female, age 72, unknown 12.5
2286 Male, age 75, left hemisphere 7.1
2732 Male, age 80, right hemisphere 4.3
2391 Female, age 94, left hemisphere 0.7
Nucleus basalis of Meynert
nTPM: 5.8
2484 Female, age 94, left hemisphere 11.6
2393 Male, age 80, right hemisphere 10.3
2821 Male, age 75, both hemispheres 1.3
2569 Male, age 61, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 18.7
2195 Female, age 85, both hemispheres 24.7
2029 Male, age 61, right hemisphere 24.5
2775 Male, age 80, right hemisphere 22.3
1812 Female, age 91, both hemispheres 16.5
1979 Male, age 74, unknown 5.4
Olfactory tubercle
nTPM: 17.6
1846 Male, age 80, right hemisphere 19.6
2487 Female, age 94, left hemisphere 18.4
1998 Female, age 91, both hemispheres 18.2
2856 Male, age 75, right hemisphere 14.1
Putamen
nTPM: 13.6
2466 Female, age 79, unknown 25.7
1838 Male, age 80, right hemisphere 20.2
1829 Male, age 74, unknown 15.5
1937 Female, age 91, right hemisphere 15.0
2489 Female, age 72, unknown 9.0
2647 Male, age 75, left hemisphere 5.1
2482 Female, age 94, left hemisphere 4.7
Septal nuclei
nTPM: 14.7
1960 Male, age 74, unknown 32.7
2031 Female, age 72, unknown 29.6
2629 Female, age 94, right hemisphere 14.3
2009 Female, age 91, both hemispheres 13.5
2059 Female, age 85, both hemispheres 12.7
2199 Male, age 80, right hemisphere 0.0
2394 Male, age 61, left hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 35.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 24.6
Samples: 246

Max nTPM: 55.5
Min nTPM: 0.4
Std nTPM: 13.4
Median nTPM: 24.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 55.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 53.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 51.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 51.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 51.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 50.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 49.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 48.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 48.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 48.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 47.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 35.5
Samples: 246

Max nTPM: 87.6
Min nTPM: 0.4
Std nTPM: 19.3
Median nTPM: 36.8
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 87.6
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 83.6
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 80.9
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 77.9
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 75.7
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 74.5
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 72.5
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 71.6
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 69.1
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 68.7
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 66.9
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Brain - Putamen (basal ganglia)
Average nTPM: 25.5
Samples: 205

Max nTPM: 67.0
Min nTPM: 0.8
Std nTPM: 15.0
Median nTPM: 25.2
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 67.0
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 59.7
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 57.9
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 56.6
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 56.5
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 52.2
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 52.1
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 51.4
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 50.6
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 50.4
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 50.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 95.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 62.7
FF:10164-103B2 76 years, female 62.7
Globus pallidus
Scaled Tags Per Million: 8.1
FF:10175-103C4 60 years, female 12.6
FF:10161-103A8 76 years, female 3.6
Nucleus accumbens
Scaled Tags Per Million: 95.3
FF:10037-101F1 23-56 years, mixed 95.3
Putamen
Scaled Tags Per Million: 50.6
FF:10176-103C5 60 years, female 50.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 73.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 73.4
Samples: 4

Max nTPM: 82.0
Min nTPM: 64.4
Sample A Male 75.8
Sample B Male 82.0
Sample C Female 64.4
Sample D Female 71.2
Septum
nTPM: 18.4
Samples: 4

Max nTPM: 29.8
Min nTPM: 11.1
Sample A Male 29.8
Sample B Male 15.5
Sample C Female 17.3
Sample D Female 11.1
Ventral forebrain
nTPM: 63.2
Samples: 4

Max nTPM: 67.3
Min nTPM: 57.2
Sample A Male 63.6
Sample B Male 57.2
Sample C Female 67.3
Sample D Female 64.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 15.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 15.2
73907497 Antisense, RP_051214_03_A03, Mouse strain C57BL/6J (56 days, male) 17.6
79762114 Antisense, RP_071204_04_A06, Mouse strain C57BL/6J (56 days, male) 12.8
Pallidum
Expression energy: 8.0
79762114 Antisense, RP_071204_04_A06, Mouse strain C57BL/6J (56 days, male) 8.9
73907497 Antisense, RP_051214_03_A03, Mouse strain C57BL/6J (56 days, male) 7.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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