MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:13.0 nTPM
HPA:13.0 nTPM
GTEx:6.6 nTPM
FANTOM5:3.3 Scaled Tags Per Million
Pig:20.0 nTPM
Mouse:10.7 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 13.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 4.9
2019 Male, age 18, unknown 6.1
1827 Male, age 72, unknown 5.2
1870 Female, age 42, unknown 5.0
1833 Male, age 53, unknown 4.9
2586 Male, age 75, left hemisphere 4.9
1830 Male, age 51, unknown 4.7
2828 Female, age 72, unknown 4.7
2219 Male, age 76, both hemispheres 4.5
2411 Female, age 72, unknown 4.5
2666 Male, age 74, left hemisphere 4.3
Dorsal raphe nucleus
nTPM: 10.6
2298 Female, age 72, unknown 18.6
2016 Female, age 72, unknown 14.7
1828 Male, age 53, unknown 9.4
2047 Male, age 72, unknown 5.7
2750 Male, age 76, both hemispheres 4.7
Inferior colliculus
nTPM: 5.0
2849 Male, age 72, unknown 5.3
1890 Male, age 53, unknown 5.1
2097 Female, age 72, unknown 5.1
1848 Female, age 42, unknown 4.6
Median raphe nucleus
nTPM: 5.3
2220 Male, age 76, midline 5.3
Pedunculopontine tegmental nucleus
nTPM: 4.7
2334 Male, age 80, both hemispheres 5.0
2338 Male, age 61, both hemispheres 4.6
1921 Female, age 85, both hemispheres 4.5
Periaquaductal grey, anterior
nTPM: 7.7
1795 Male, age 51, unknown 11.7
2502 Female, age 75, unknown 6.2
1947 Male, age 18, unknown 5.1
Periaquaductal grey, dorsal
nTPM: 9.9
2850 Male, age 76, both hemispheres 15.2
1840 Male, age 53, unknown 10.2
1831 Male, age 72, unknown 7.5
2464 Female, age 72, unknown 6.8
Periaquaductal grey, lateral
nTPM: 13.0
2272 Male, age 74, both hemispheres 20.2
2140 Male, age 76, both hemispheres 12.7
2053 Male, age 18, unknown 6.1
Pretectal area
nTPM: 6.7
2273 Male, age 74, both hemispheres 17.7
2224 Female, age 72, unknown 9.8
2825 Male, age 18, unknown 5.8
2316 Male, age 76, right hemisphere 5.7
2667 Female, age 75, unknown 5.7
2407 Male, age 75, both hemispheres 5.4
1815 Male, age 53, unknown 4.8
1816 Male, age 51, unknown 4.7
2007 Male, age 72, unknown 4.7
1817 Female, age 42, unknown 4.6
1944 Female, age 72, unknown 4.6
Red nucleus
nTPM: 5.1
2785 Male, age 18, unknown 6.2
2227 Male, age 72, unknown 5.7
2725 Female, age 75, unknown 5.7
2769 Male, age 72, unknown 5.3
2503 Female, age 72, unknown 5.2
1865 Male, age 51, unknown 4.9
2823 Male, age 76, right hemisphere 4.9
1904 Male, age 53, unknown 4.8
2584 Male, age 75, left hemisphere 4.8
1821 Female, age 72, unknown 4.7
1954 Female, age 42, unknown 4.7
2588 Male, age 74, left hemisphere 4.4
Substantia nigra
nTPM: 5.1
2699 Male, age 18, unknown 5.9
2590 Female, age 75, unknown 5.5
1941 Male, age 53, unknown 5.3
2409 Female, age 72, unknown 5.2
1851 Male, age 51, unknown 5.1
1916 Female, age 42, unknown 5.1
2241 Male, age 72, unknown 4.7
1889 Female, age 72, unknown 4.6
2583 Male, age 75, right hemisphere 4.5
2665 Male, age 74, both hemispheres 4.5
Superior colliculus
nTPM: 6.0
1995 Male, age 72, unknown 10.0
2587 Male, age 74, left hemisphere 8.4
2261 Male, age 18, unknown 6.0
1913 Female, age 42, unknown 5.7
1796 Male, age 53, unknown 5.2
2664 Male, age 75, both hemispheres 5.2
2087 Female, age 72, unknown 5.0
1839 Male, age 51, unknown 4.9
2668 Female, age 75, unknown 4.9
1895 Male, age 76, right hemisphere 4.7
Ventral tegmental area
nTPM: 5.1
2021 Male, age 53, unknown 5.5
1942 Male, age 51, unknown 5.3
1915 Female, age 42, unknown 5.2
2223 Female, age 72, unknown 5.1
2218 Male, age 76, both hemispheres 4.9
2410 Female, age 72, unknown 4.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 6.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.6
Samples: 139

Max nTPM: 86.6
Min nTPM: 0.8
Std nTPM: 7.6
Median nTPM: 5.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 86.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 25.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 17.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 17.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 13.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 13.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 13.2
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 12.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 12.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 11.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 11.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 3.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 3.3
FF:10158-103A5 76 years, female 3.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.0
Pig sample Sample description nTPM
Midbrain
nTPM: 5.2
Samples: 4

Max nTPM: 8.3
Min nTPM: 1.5
Sample A Female 8.3
Sample B Female 7.6
Sample C Male 3.3
Sample D Male 1.5
Periaqueductal gray
nTPM: 20.1
Samples: 3

Max nTPM: 23.3
Min nTPM: 18.4
Sample B Female 18.4
Sample C Male 18.5
Sample D Male 23.3
Substantia nigra
nTPM: 4.1
Samples: 4

Max nTPM: 6.5
Min nTPM: 2.9
Sample A Female 6.5
Sample B Female 3.8
Sample C Male 3.3
Sample D Male 2.9
Superior colliculi
nTPM: 5.7
Samples: 4

Max nTPM: 14.0
Min nTPM: 2.3
Sample A Female 3.2
Sample B Female 14.0
Sample C Male 3.4
Sample D Male 2.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 10.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.7
Samples: 4

Max nTPM: 13.2
Min nTPM: 7.9
Sample A Male 9.8
Sample B Male 11.8
Sample C Female 7.9
Sample D Female 13.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
69236598 Antisense, RP_050329_04_A06, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.