BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:34.4 nTPM
HPA:34.4 nTPM
GTEx:29.3 nTPM
FANTOM5:38.1 Scaled Tags Per Million
Pig:13.0 nTPM
Mouse:55.6 nTPM
Allen mouse:4.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA043137
Glial cells Low
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 34.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 32.3
1781 Male, age 74, unknown 33.7
1854 Male, age 80, left hemisphere 32.7
2481 Female, age 94, left hemisphere 32.7
1857 Female, age 85, left hemisphere 32.3
2290 Female, age 72, unknown 32.1
2846 Female, age 79, unknown 31.9
2289 Male, age 61, right hemisphere 31.5
2288 Male, age 75, left hemisphere 31.4
Claustrum
nTPM: 33.7
2645 Female, age 72, unknown 35.9
2284 Female, age 91, both hemispheres 34.6
2568 Male, age 61, both hemispheres 34.1
1956 Male, age 74, unknown 34.0
2198 Male, age 80, both hemispheres 33.7
2292 Female, age 85, both hemispheres 33.6
2491 Male, age 75, both hemispheres 32.9
2392 Female, age 94, both hemispheres 32.7
2196 Female, age 79, unknown 31.9
Globus pallidus, externus
nTPM: 33.0
2395 Male, age 75, both hemispheres 33.6
2646 Male, age 61, right hemisphere 33.3
2772 Female, age 79, unknown 33.0
2567 Female, age 72, unknown 32.8
1996 Male, age 80, right hemisphere 32.4
Globus pallidus, internus
nTPM: 33.3
1818 Male, age 74, unknown 34.6
2483 Female, age 94, right hemisphere 34.2
2566 Female, age 72, unknown 34.1
2111 Female, age 85, right hemisphere 33.5
2778 Female, age 91, both hemispheres 32.8
2287 Male, age 75, right hemisphere 32.3
2037 Male, age 80, right hemisphere 31.5
Nucleus accumbens
nTPM: 31.9
1783 Male, age 74, unknown 32.9
2824 Male, age 61, right hemisphere 32.5
2391 Female, age 94, left hemisphere 32.2
2732 Male, age 80, right hemisphere 32.2
1806 Female, age 85, left hemisphere 31.6
2286 Male, age 75, left hemisphere 31.5
1856 Female, age 91, right hemisphere 31.2
2698 Female, age 72, unknown 30.8
Nucleus basalis of Meynert
nTPM: 32.5
2569 Male, age 61, both hemispheres 34.0
2484 Female, age 94, left hemisphere 32.8
2393 Male, age 80, right hemisphere 32.1
2821 Male, age 75, both hemispheres 31.1
Nucleus of the diagonal band
nTPM: 33.7
2029 Male, age 61, right hemisphere 34.8
2775 Male, age 80, right hemisphere 34.5
2195 Female, age 85, both hemispheres 33.4
1812 Female, age 91, both hemispheres 33.3
1979 Male, age 74, unknown 32.2
Olfactory tubercle
nTPM: 34.4
1998 Female, age 91, both hemispheres 35.3
1846 Male, age 80, right hemisphere 34.9
2487 Female, age 94, left hemisphere 33.8
2856 Male, age 75, right hemisphere 33.4
Putamen
nTPM: 32.6
2466 Female, age 79, unknown 34.2
2647 Male, age 75, left hemisphere 33.7
1838 Male, age 80, right hemisphere 32.5
1937 Female, age 91, right hemisphere 32.4
2482 Female, age 94, left hemisphere 32.1
1829 Male, age 74, unknown 31.7
2489 Female, age 72, unknown 31.7
Septal nuclei
nTPM: 33.2
1960 Male, age 74, unknown 34.6
2059 Female, age 85, both hemispheres 34.3
2031 Female, age 72, unknown 34.0
2009 Female, age 91, both hemispheres 33.3
2629 Female, age 94, right hemisphere 32.5
2394 Male, age 61, left hemisphere 31.9
2199 Male, age 80, right hemisphere 31.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 29.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 28.3
Samples: 246

Max nTPM: 43.9
Min nTPM: 18.0
Std nTPM: 4.0
Median nTPM: 28.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 43.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 39.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 37.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 37.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 37.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 37.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 36.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 36.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 36.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 36.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 36.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 29.3
Samples: 246

Max nTPM: 55.2
Min nTPM: 19.0
Std nTPM: 5.4
Median nTPM: 28.6
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 55.2
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 45.4
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 44.9
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 44.3
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 43.5
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 40.7
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 40.3
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 40.3
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 40.2
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 39.8
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 39.1
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Brain - Putamen (basal ganglia)
Average nTPM: 28.6
Samples: 205

Max nTPM: 39.8
Min nTPM: 19.7
Std nTPM: 3.6
Median nTPM: 28.3
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 39.8
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 37.6
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 37.3
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 37.1
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 36.6
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 35.9
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 35.9
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 35.8
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 35.2
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 35.0
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 35.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 32.9
FF:10164-103B2 76 years, female 32.9
Globus pallidus
Scaled Tags Per Million: 23.0
FF:10161-103A8 76 years, female 25.6
FF:10175-103C4 60 years, female 20.5
Nucleus accumbens
Scaled Tags Per Million: 38.1
FF:10037-101F1 23-56 years, mixed 38.1
Putamen
Scaled Tags Per Million: 32.2
FF:10176-103C5 60 years, female 32.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 13.0
Pig sample Sample description nTPM
Caudate
nTPM: 11.7
Samples: 4

Max nTPM: 12.7
Min nTPM: 10.5
Sample A Female 10.9
Sample B Female 12.7
Sample C Male 12.7
Sample D Male 10.5
Putamen
nTPM: 11.7
Samples: 4

Max nTPM: 13.3
Min nTPM: 9.1
Sample A Female 13.0
Sample B Female 9.1
Sample C Male 13.3
Sample D Male 11.5
Septum
nTPM: 13.0
Samples: 4

Max nTPM: 15.7
Min nTPM: 11.4
Sample A Female 13.1
Sample B Female 11.8
Sample C Male 15.7
Sample D Male 11.4
Ventral pallidum
nTPM: 12.1
Samples: 4

Max nTPM: 16.4
Min nTPM: 9.8
Sample A Female 9.8
Sample B Female 11.7
Sample C Male 16.4
Sample D Male 10.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 55.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 54.9
Samples: 4

Max nTPM: 57.9
Min nTPM: 52.5
Sample A Male 55.3
Sample B Male 57.9
Sample C Female 53.7
Sample D Female 52.5
Septum
nTPM: 48.8
Samples: 4

Max nTPM: 51.8
Min nTPM: 47.2
Sample A Male 51.8
Sample B Male 47.5
Sample C Female 48.8
Sample D Female 47.2
Ventral forebrain
nTPM: 55.6
Samples: 4

Max nTPM: 57.1
Min nTPM: 53.8
Sample A Male 57.1
Sample B Male 55.4
Sample C Female 53.8
Sample D Female 56.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.5
71608230 Antisense, RP_050927_01_D02, Mouse strain C57BL/6J (56 days, male) 5.7
293027 Antisense, RP_040609_01_E01, Mouse strain C57BL/6J (56 days, male) 3.4
Pallidum
Expression energy: 3.9
71608230 Antisense, RP_050927_01_D02, Mouse strain C57BL/6J (56 days, male) 5.3
293027 Antisense, RP_040609_01_E01, Mouse strain C57BL/6J (56 days, male) 2.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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