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TISSUE PRIMARY DATA KIDNEY Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Kidney
Tissue proteome
Kidney
KIDNEY - Expression summary
Protein expression
Kidneyi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Bowman's capsule: Medium
Cells in glomeruli: Medium
Collecting ducts: High
Distal tubules: High
Proximal tubules (cell body): High
Proximal tubules (microvilli): Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:399.5 nTPM
HPA:322.6 nTPM
GTEx:399.5 nTPM
FANTOM5:491.8 Scaled Tags Per Million

KIDNEY - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA042582
Bowman's capsule Medium
Cells in glomeruli Medium
Collecting ducts High
Distal tubules High
Proximal tubules (cell body) High
Proximal tubules (microvilli) Not detected



KIDNEY - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 322.6
overview
Female, age 58
Kidney sample 55
nTPM: 230.5
Cell types%
Cells in tubules:
60

Cells in glomeruli:
20

Fibroblasts:
5

Other cell types:
15

overview
Female, age 67
Kidney sample 56
nTPM: 304.1
Cell types%
Cells in tubules:
70

Cells in glomeruli:
15

Fibroblasts:
10

Other cell types:
5

overview
Female, age 55
Kidney sample 57
nTPM: 218.6
Cell types%
Cells in tubules:
80

Cells in glomeruli:
10

Fibroblasts:
5

Other cell types:
5

overview
Male, age 46
Kidney sample 58
nTPM: 305.2
Cell types%
Cells in tubules:
60

Cells in glomeruli:
25

Fibroblasts:
5

Other cell types:
10

overview
Female, age 57
Kidney sample 358
nTPM: 407.2
Cell types%
Cells in tubules:
60

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
20

overview
Male, age 78
Kidney sample 377
nTPM: 349.8
Cell types%
Cells in tubules:
65

Cells in glomeruli:
10

Fibroblasts:
5

Other cell types:
20

overview
Male, age 73
Kidney sample 380
nTPM: 595
Cell types%
Cells in tubules:
60

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
20

overview
Female, age 59
Kidney sample 394
nTPM: 178.9
Cell types%
Cells in tubules:
65

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
15

overview
Female, age 48
Kidney sample 414
nTPM: 313.9
Cell types%
Cells in tubules:
60

Cells in glomeruli:
5

Fibroblasts:
10

Other cell types:
25


KIDNEY - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 399.5
GTEx sample id Sample description nTPM
Kidney - Cortex
Average nTPM: 396.0
Samples: 85

Max nTPM: 773.2
Min nTPM: 151.5
Std nTPM: 118.9
Median nTPM: 386.5
GTEX-14C5O-2026-SM-5YYB1 60-69 years, male 773.2
GTEX-13NYB-1726-SM-5N9G2 40-49 years, male 682.8
GTEX-NPJ8-2226-SM-3TW8D 40-49 years, male 676.1
GTEX-1JMPZ-1226-SM-ARU8Y 30-39 years, male 671.5
GTEX-14E6D-2526-SM-5YYA9 50-59 years, male 628.7
GTEX-O5YV-1226-SM-EV795 60-69 years, female 577.2
GTEX-T6MN-1826-SM-EXOHN 50-59 years, male 546.5
GTEX-14C39-2126-SM-664OH 40-49 years, male 529.6
GTEX-1K9T9-1826-SM-CXZK2 50-59 years, female 526.0
GTEX-1H3VY-1926-SM-9JGHJ 50-59 years, male 521.2
GTEX-1JMQK-1926-SM-CJI3B 60-69 years, male 515.0
GTEX-17F96-1926-SM-7MGWY 70-79 years, male 511.5
GTEX-QDVN-1626-SM-48TZC 50-59 years, male 511.4
GTEX-11OF3-1326-SM-5N9FJ 60-69 years, male 504.1
GTEX-1R9PO-1626-SM-E6CPT 60-69 years, female 501.5
GTEX-Y5V6-2026-SM-5IFHO 60-69 years, male 500.6
GTEX-T5JC-1526-SM-4DM68 20-29 years, male 490.4
GTEX-REY6-1826-SM-EAZAT 60-69 years, male 488.9
GTEX-1GTWX-1826-SM-9QEHG 60-69 years, male 472.3
GTEX-1JMQJ-1726-SM-E9U4V 50-59 years, male 470.4
GTEX-1KWVE-0826-SM-CXZKO 30-39 years, male 466.3
GTEX-11TTK-1926-SM-5PNW8 60-69 years, female 465.2
GTEX-1GF9W-1326-SM-7P8PX 60-69 years, male 464.4
GTEX-1QP6S-1526-SM-EXUSG 40-49 years, male 457.9
GTEX-1HB9E-1826-SM-D4P33 50-59 years, male 452.4
GTEX-1497J-0826-SM-5NQAJ 60-69 years, male 451.6
GTEX-13O1R-2526-SM-5N9FW 60-69 years, male 450.6
GTEX-QLQW-1626-SM-CMKFE 30-39 years, male 449.0
GTEX-1H3NZ-2126-SM-9WPQ6 60-69 years, male 436.5
GTEX-12696-0926-SM-5FQTV 60-69 years, male 435.3
GTEX-S33H-1426-SM-EZ6L7 30-39 years, male 431.0
GTEX-1IKK5-0926-SM-A9G2U 60-69 years, male 426.4
GTEX-1F48J-2226-SM-7MXTN 50-59 years, female 421.7
GTEX-1HCU7-1826-SM-A9G2A 50-59 years, male 420.5
GTEX-17F97-1926-SM-7IGM4 50-59 years, male 419.2
GTEX-ZDXO-0226-SM-4WKH7 60-69 years, male 412.2
GTEX-P4QS-1126-SM-3NMD5 60-69 years, male 410.8
GTEX-ZYT6-2226-SM-5GIC9 30-39 years, male 402.3
GTEX-1J1OQ-1426-SM-AHZ3P 40-49 years, female 401.9
GTEX-12WSG-0826-SM-5EQ5A 50-59 years, female 395.9
GTEX-1LG7Y-2726-SM-D5OVW 50-59 years, male 394.8
GTEX-17HHY-2326-SM-7KFSR 50-59 years, male 392.6
GTEX-1GN1U-2126-SM-AHZ4J 50-59 years, female 386.5
GTEX-1PWST-2226-SM-EVR3G 70-79 years, male 382.6
GTEX-1NV8Z-2226-SM-EXOJ2 60-69 years, male 382.1
GTEX-1GF9V-1926-SM-9JGHE 60-69 years, male 379.2
GTEX-ZC5H-1726-SM-5HL7X 40-49 years, female 372.1
GTEX-QDT8-1726-SM-EYYV6 30-39 years, female 371.8
GTEX-ZYFG-1626-SM-5GZYY 60-69 years, female 371.1
GTEX-1CB4J-1926-SM-7MGX8 60-69 years, male 369.6
GTEX-1C6VQ-2326-SM-7IGN1 50-59 years, male 363.5
GTEX-13RTJ-2226-SM-5S2Q1 60-69 years, male 359.7
GTEX-145MN-0326-SM-5QGQI 30-39 years, male 358.5
GTEX-1EKGG-2226-SM-7IGOA 60-69 years, male 355.5
GTEX-13OW6-1826-SM-5N9F9 50-59 years, male 354.1
GTEX-1GMR3-2426-SM-7MXV2 40-49 years, male 353.5
GTEX-1MUQO-2526-SM-E9TJN 60-69 years, male 351.0
GTEX-ZLFU-0926-SM-5P9F8 40-49 years, male 348.4
GTEX-15CHQ-2126-SM-6871M 60-69 years, male 340.7
GTEX-15DYW-2026-SM-6AJBD 60-69 years, female 334.4
GTEX-1N2DW-1826-SM-EAZ54 50-59 years, male 333.4
GTEX-1JMLX-1526-SM-AHZ3N 50-59 years, male 331.9
GTEX-1A8FM-2026-SM-7P8RN 50-59 years, female 329.3
GTEX-XPVG-0526-SM-4B65N 50-59 years, male 304.2
GTEX-1N2EF-1426-SM-EXUSH 60-69 years, male 303.5
GTEX-1BAJH-1826-SM-731DA 70-79 years, male 300.4
GTEX-1JJ6O-2526-SM-AHZ3J 60-69 years, male 291.5
GTEX-Y5V5-1226-SM-EYYVP 60-69 years, female 284.2
GTEX-1HBPI-2026-SM-CE6RZ 50-59 years, male 279.6
GTEX-147F4-2626-SM-5Q5CS 50-59 years, male 278.8
GTEX-16MT8-1926-SM-7EPGL 60-69 years, female 278.4
GTEX-1AX8Z-2326-SM-731CR 60-69 years, male 276.8
GTEX-1399S-0526-SM-5IJG8 30-39 years, female 276.4
GTEX-11GS4-2326-SM-5A5KS 60-69 years, male 270.5
GTEX-13OVL-1826-SM-5KLZR 50-59 years, male 270.3
GTEX-ZVZP-0926-SM-5GIDB 50-59 years, male 263.2
GTEX-1E2YA-1626-SM-7MGXS 50-59 years, male 254.5
GTEX-1I1GP-1926-SM-CNNQU 50-59 years, male 243.4
GTEX-1IL2V-1826-SM-ARU7R 70-79 years, male 240.6
GTEX-13OVI-1126-SM-5KLZF 60-69 years, female 219.3
GTEX-1OJC4-2326-SM-DTXA5 50-59 years, female 214.2
GTEX-13112-2126-SM-5GCO4 50-59 years, male 214.1
GTEX-ZE9C-1426-SM-4WKGM 60-69 years, male 180.8
GTEX-1A3MW-2226-SM-73KUX 60-69 years, female 179.7
GTEX-RN64-1626-SM-48FD7 50-59 years, male 151.5
Show allShow less
Kidney - Medulla
Average nTPM: 399.5
Samples: 4

Max nTPM: 553.4
Min nTPM: 265.5
Std nTPM: 134.5
Median nTPM: 389.5
GTEX-RU72-1926-SM-EAZ3F 50-59 years, female 553.4
GTEX-T5JC-1626-SM-EZ6KW 20-29 years, male 513.1
GTEX-TKQ2-0626-SM-EZ6LB 50-59 years, male 265.9
GTEX-R55E-2026-SM-EZ6L1 20-29 years, male 265.5

KIDNEY - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 491.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Kidney
Scaled Tags Per Million: 491.8
FF:10017-101C8 60,62,63 years, female 491.8

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