MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:292.5 nTPM
HPA:292.5 nTPM
GTEx:249.5 nTPM
FANTOM5:225.6 Scaled Tags Per Million
Pig:176.2 nTPM
Mouse:269.6 nTPM
Allen mouse:13.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 292.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 213.8
2828 Female, age 72, unknown 275.4
2586 Male, age 75, left hemisphere 250.6
1827 Male, age 72, unknown 237.8
1870 Female, age 42, unknown 230.9
1833 Male, age 53, unknown 212.6
2411 Female, age 72, unknown 205.3
2666 Male, age 74, left hemisphere 198.1
1830 Male, age 51, unknown 190.3
2019 Male, age 18, unknown 173.3
2219 Male, age 76, both hemispheres 163.8
Dorsal raphe nucleus
nTPM: 267.1
2016 Female, age 72, unknown 321.8
1828 Male, age 53, unknown 292.8
2298 Female, age 72, unknown 268.2
2047 Male, age 72, unknown 252.1
2750 Male, age 76, both hemispheres 200.4
Inferior colliculus
nTPM: 261.6
1848 Female, age 42, unknown 290.0
2849 Male, age 72, unknown 271.9
2097 Female, age 72, unknown 253.7
1890 Male, age 53, unknown 230.7
Median raphe nucleus
nTPM: 206.3
2220 Male, age 76, midline 206.3
Pedunculopontine tegmental nucleus
nTPM: 222.8
2334 Male, age 80, both hemispheres 245.7
1921 Female, age 85, both hemispheres 236.6
2338 Male, age 61, both hemispheres 186.0
Periaquaductal grey, anterior
nTPM: 233.8
1795 Male, age 51, unknown 243.5
2502 Female, age 75, unknown 233.4
1947 Male, age 18, unknown 224.6
Periaquaductal grey, dorsal
nTPM: 292.5
1840 Male, age 53, unknown 335.6
2850 Male, age 76, both hemispheres 321.7
2464 Female, age 72, unknown 260.4
1831 Male, age 72, unknown 252.4
Periaquaductal grey, lateral
nTPM: 277.1
2140 Male, age 76, both hemispheres 331.2
2053 Male, age 18, unknown 295.7
2272 Male, age 74, both hemispheres 204.4
Pretectal area
nTPM: 247.4
2667 Female, age 75, unknown 295.3
2224 Female, age 72, unknown 290.7
1944 Female, age 72, unknown 270.0
2273 Male, age 74, both hemispheres 260.4
2316 Male, age 76, right hemisphere 254.6
1816 Male, age 51, unknown 251.7
2825 Male, age 18, unknown 251.1
1817 Female, age 42, unknown 238.4
1815 Male, age 53, unknown 220.6
2407 Male, age 75, both hemispheres 203.7
2007 Male, age 72, unknown 184.9
Red nucleus
nTPM: 213.8
1954 Female, age 42, unknown 239.0
1821 Female, age 72, unknown 238.8
2503 Female, age 72, unknown 238.1
2227 Male, age 72, unknown 237.2
2769 Male, age 72, unknown 236.9
2823 Male, age 76, right hemisphere 225.1
2725 Female, age 75, unknown 219.2
1904 Male, age 53, unknown 203.5
1865 Male, age 51, unknown 198.7
2588 Male, age 74, left hemisphere 191.4
2785 Male, age 18, unknown 170.5
2584 Male, age 75, left hemisphere 167.0
Substantia nigra
nTPM: 249.2
2699 Male, age 18, unknown 360.8
1916 Female, age 42, unknown 287.6
2409 Female, age 72, unknown 255.4
2241 Male, age 72, unknown 253.3
1851 Male, age 51, unknown 249.3
1889 Female, age 72, unknown 237.2
2590 Female, age 75, unknown 231.2
2665 Male, age 74, both hemispheres 224.8
1941 Male, age 53, unknown 197.9
2583 Male, age 75, right hemisphere 194.7
Superior colliculus
nTPM: 232.3
2087 Female, age 72, unknown 261.5
1796 Male, age 53, unknown 260.6
2664 Male, age 75, both hemispheres 247.9
1839 Male, age 51, unknown 247.1
2261 Male, age 18, unknown 236.9
1995 Male, age 72, unknown 234.3
1913 Female, age 42, unknown 218.3
2587 Male, age 74, left hemisphere 217.6
1895 Male, age 76, right hemisphere 201.7
2668 Female, age 75, unknown 197.4
Ventral tegmental area
nTPM: 237.9
2021 Male, age 53, unknown 263.5
1915 Female, age 42, unknown 258.6
2410 Female, age 72, unknown 244.9
1942 Male, age 51, unknown 238.7
2218 Male, age 76, both hemispheres 229.6
2223 Female, age 72, unknown 192.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 249.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 249.5
Samples: 139

Max nTPM: 843.1
Min nTPM: 54.6
Std nTPM: 135.5
Median nTPM: 219.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 843.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 744.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 610.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 604.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 588.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 565.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 551.6
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 536.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 497.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 489.7
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 482.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 225.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 225.6
FF:10158-103A5 76 years, female 225.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 176.2
Pig sample Sample description nTPM
Midbrain
nTPM: 176.2
Samples: 4

Max nTPM: 202.8
Min nTPM: 140.3
Sample A Female 202.8
Sample B Female 199.6
Sample C Male 161.9
Sample D Male 140.3
Periaqueductal gray
nTPM: 172.2
Samples: 3

Max nTPM: 208.5
Min nTPM: 147.0
Sample B Female 208.5
Sample C Male 161.2
Sample D Male 147.0
Substantia nigra
nTPM: 164.1
Samples: 4

Max nTPM: 177.8
Min nTPM: 148.6
Sample A Female 169.5
Sample B Female 160.5
Sample C Male 148.6
Sample D Male 177.8
Superior colliculi
nTPM: 170.4
Samples: 4

Max nTPM: 193.0
Min nTPM: 161.4
Sample A Female 193.0
Sample B Female 161.4
Sample C Male 165.6
Sample D Male 161.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 269.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 269.6
Samples: 4

Max nTPM: 281.6
Min nTPM: 261.2
Sample A Male 263.5
Sample B Male 261.2
Sample C Female 281.6
Sample D Female 272.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.3
69838759 Antisense, RP_050324_01_G12, Mouse strain C57BL/6J (56 days, male) 13.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.