BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:8.7 nTPM
HPA:8.7 nTPM
GTEx:6.7 nTPM
FANTOM5:0.0 Scaled Tags Per Million
Pig:0.2 nTPM
Mouse:0.0 nTPM
Allen mouse:0.4 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi
Antibody HPA042516
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 8.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 4.7
2289 Male, age 61, right hemisphere 5.9
2288 Male, age 75, left hemisphere 5.6
1854 Male, age 80, left hemisphere 5.0
1781 Male, age 74, unknown 4.9
2481 Female, age 94, left hemisphere 4.9
2846 Female, age 79, unknown 4.5
2290 Female, age 72, unknown 4.0
1857 Female, age 85, left hemisphere 3.0
Claustrum
nTPM: 5.6
2292 Female, age 85, both hemispheres 7.8
1956 Male, age 74, unknown 7.3
2568 Male, age 61, both hemispheres 5.6
2284 Female, age 91, both hemispheres 5.3
2645 Female, age 72, unknown 5.3
2198 Male, age 80, both hemispheres 5.2
2491 Male, age 75, both hemispheres 5.0
2196 Female, age 79, unknown 4.8
2392 Female, age 94, both hemispheres 4.2
Globus pallidus, externus
nTPM: 8.7
2567 Female, age 72, unknown 11.8
2646 Male, age 61, right hemisphere 9.1
1996 Male, age 80, right hemisphere 8.6
2772 Female, age 79, unknown 7.2
2395 Male, age 75, both hemispheres 6.6
Globus pallidus, internus
nTPM: 8.3
2566 Female, age 72, unknown 10.9
2111 Female, age 85, right hemisphere 9.9
2287 Male, age 75, right hemisphere 9.0
1818 Male, age 74, unknown 8.0
2778 Female, age 91, both hemispheres 7.7
2037 Male, age 80, right hemisphere 7.5
2483 Female, age 94, right hemisphere 5.2
Nucleus accumbens
nTPM: 4.6
2698 Female, age 72, unknown 6.2
2732 Male, age 80, right hemisphere 5.5
2286 Male, age 75, left hemisphere 4.8
2391 Female, age 94, left hemisphere 4.6
2824 Male, age 61, right hemisphere 4.5
1783 Male, age 74, unknown 4.1
1806 Female, age 85, left hemisphere 4.0
1856 Female, age 91, right hemisphere 3.1
Nucleus basalis of Meynert
nTPM: 6.2
2569 Male, age 61, both hemispheres 9.3
2821 Male, age 75, both hemispheres 5.5
2393 Male, age 80, right hemisphere 5.3
2484 Female, age 94, left hemisphere 4.8
Nucleus of the diagonal band
nTPM: 3.3
2029 Male, age 61, right hemisphere 4.5
1812 Female, age 91, both hemispheres 3.4
1979 Male, age 74, unknown 3.4
2775 Male, age 80, right hemisphere 2.8
2195 Female, age 85, both hemispheres 2.6
Olfactory tubercle
nTPM: 3.6
1998 Female, age 91, both hemispheres 3.9
2487 Female, age 94, left hemisphere 3.9
2856 Male, age 75, right hemisphere 3.7
1846 Male, age 80, right hemisphere 3.1
Putamen
nTPM: 5.2
1829 Male, age 74, unknown 6.9
2489 Female, age 72, unknown 6.1
2647 Male, age 75, left hemisphere 6.1
1838 Male, age 80, right hemisphere 4.7
1937 Female, age 91, right hemisphere 4.4
2466 Female, age 79, unknown 4.3
2482 Female, age 94, left hemisphere 4.1
Septal nuclei
nTPM: 3.5
2394 Male, age 61, left hemisphere 4.4
2629 Female, age 94, right hemisphere 3.9
2199 Male, age 80, right hemisphere 3.7
2009 Female, age 91, both hemispheres 3.5
2059 Female, age 85, both hemispheres 3.5
2031 Female, age 72, unknown 2.9
1960 Male, age 74, unknown 2.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 6.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 4.1
Samples: 246

Max nTPM: 11.2
Min nTPM: 0.8
Std nTPM: 1.9
Median nTPM: 3.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 11.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 11.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 9.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 8.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 8.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 8.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 8.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 8.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 8.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 8.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 8.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 3.3
Samples: 246

Max nTPM: 12.7
Min nTPM: 0.4
Std nTPM: 2.0
Median nTPM: 2.7
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 12.7
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 11.8
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 11.7
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 9.8
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 9.8
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 9.7
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 9.5
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 8.9
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 8.9
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 8.4
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 7.6
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Brain - Putamen (basal ganglia)
Average nTPM: 6.7
Samples: 205

Max nTPM: 20.5
Min nTPM: 0.7
Std nTPM: 3.2
Median nTPM: 6.2
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 20.5
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 18.3
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 16.4
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 15.7
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 15.6
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 15.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 15.2
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 14.7
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 14.4
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 14.3
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 13.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.0
FF:10164-103B2 76 years, female 0.0
Globus pallidus
Scaled Tags Per Million: 0.0
FF:10175-103C4 60 years, female 0.0
FF:10161-103A8 76 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 0.0
FF:10037-101F1 23-56 years, mixed 0.0
Putamen
Scaled Tags Per Million: 0.0
FF:10176-103C5 60 years, female 0.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 0.2
Pig sample Sample description nTPM
Caudate
nTPM: 0.1
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.1
Sample C Male 0.0
Sample D Male 0.1
Putamen
nTPM: 0.2
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.1
Sample A Female 0.4
Sample B Female 0.1
Sample C Male 0.1
Sample D Male 0.3
Septum
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.2
Ventral pallidum
nTPM: 0.1
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.1
Sample C Male 0.3
Sample D Male 0.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.2
Sample D Female 0.0
Septum
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0
Ventral forebrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.4
68667228 Antisense, RP_050201_01_H02, Mouse strain C57BL/6J (56 days, male) 0.4
Pallidum
Expression energy: 0.4
68667228 Antisense, RP_050201_01_H02, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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