BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:29.8 nTPM
HPA:29.8 nTPM
GTEx:27.9 nTPM
FANTOM5:61.6 Scaled Tags Per Million
Mouse:68.5 nTPM
Allen mouse:5.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 29.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 29.1
2846 Female, age 79, unknown 30.2
1857 Female, age 85, left hemisphere 30.0
2481 Female, age 94, left hemisphere 29.6
2290 Female, age 72, unknown 29.4
1854 Male, age 80, left hemisphere 29.3
1781 Male, age 74, unknown 28.6
2288 Male, age 75, left hemisphere 28.2
2289 Male, age 61, right hemisphere 27.6
Claustrum
nTPM: 26.9
2198 Male, age 80, both hemispheres 28.5
1956 Male, age 74, unknown 28.4
2196 Female, age 79, unknown 27.6
2292 Female, age 85, both hemispheres 26.9
2392 Female, age 94, both hemispheres 26.8
2284 Female, age 91, both hemispheres 26.4
2645 Female, age 72, unknown 26.2
2491 Male, age 75, both hemispheres 25.8
2568 Male, age 61, both hemispheres 25.8
Globus pallidus, externus
nTPM: 27.0
2395 Male, age 75, both hemispheres 29.4
2772 Female, age 79, unknown 28.3
1996 Male, age 80, right hemisphere 27.1
2567 Female, age 72, unknown 26.0
2646 Male, age 61, right hemisphere 24.1
Globus pallidus, internus
nTPM: 26.8
1818 Male, age 74, unknown 27.4
2483 Female, age 94, right hemisphere 27.4
2566 Female, age 72, unknown 27.2
2287 Male, age 75, right hemisphere 26.7
2037 Male, age 80, right hemisphere 26.6
2778 Female, age 91, both hemispheres 26.6
2111 Female, age 85, right hemisphere 25.7
Nucleus accumbens
nTPM: 29.8
2824 Male, age 61, right hemisphere 32.4
1783 Male, age 74, unknown 31.4
1806 Female, age 85, left hemisphere 30.7
1856 Female, age 91, right hemisphere 29.6
2286 Male, age 75, left hemisphere 29.5
2698 Female, age 72, unknown 29.2
2391 Female, age 94, left hemisphere 27.8
2732 Male, age 80, right hemisphere 27.5
Nucleus basalis of Meynert
nTPM: 27.1
2484 Female, age 94, left hemisphere 28.5
2393 Male, age 80, right hemisphere 28.3
2821 Male, age 75, both hemispheres 26.2
2569 Male, age 61, both hemispheres 25.3
Nucleus of the diagonal band
nTPM: 28.6
2195 Female, age 85, both hemispheres 29.6
2029 Male, age 61, right hemisphere 29.5
2775 Male, age 80, right hemisphere 28.4
1812 Female, age 91, both hemispheres 28.3
1979 Male, age 74, unknown 27.1
Olfactory tubercle
nTPM: 27.8
1998 Female, age 91, both hemispheres 28.8
1846 Male, age 80, right hemisphere 28.2
2487 Female, age 94, left hemisphere 27.9
2856 Male, age 75, right hemisphere 26.3
Putamen
nTPM: 29.1
2466 Female, age 79, unknown 31.9
1838 Male, age 80, right hemisphere 29.8
1937 Female, age 91, right hemisphere 29.0
1829 Male, age 74, unknown 28.9
2482 Female, age 94, left hemisphere 28.9
2647 Male, age 75, left hemisphere 27.9
2489 Female, age 72, unknown 27.6
Septal nuclei
nTPM: 27.5
1960 Male, age 74, unknown 30.1
2031 Female, age 72, unknown 28.8
2059 Female, age 85, both hemispheres 28.5
2629 Female, age 94, right hemisphere 26.8
2009 Female, age 91, both hemispheres 26.7
2199 Male, age 80, right hemisphere 25.8
2394 Male, age 61, left hemisphere 25.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 27.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 24.6
Samples: 246

Max nTPM: 40.8
Min nTPM: 11.7
Std nTPM: 5.4
Median nTPM: 24.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 40.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 39.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 37.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 37.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 37.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 37.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 36.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 36.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 35.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 35.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 34.7
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 27.9
Samples: 246

Max nTPM: 60.0
Min nTPM: 7.6
Std nTPM: 7.2
Median nTPM: 27.5
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 60.0
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 55.0
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 48.8
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 42.7
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 42.6
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 42.4
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 41.4
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 41.3
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 41.3
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 41.2
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 41.1
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 25.3
Samples: 205

Max nTPM: 45.7
Min nTPM: 11.0
Std nTPM: 5.7
Median nTPM: 24.4
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 45.7
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 42.0
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 39.0
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 38.9
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 37.2
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 37.1
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 37.1
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 36.8
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 36.7
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 36.5
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 36.4
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 61.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 55.7
FF:10164-103B2 76 years, female 55.7
Globus pallidus
Scaled Tags Per Million: 46.3
FF:10161-103A8 76 years, female 48.4
FF:10175-103C4 60 years, female 44.2
Nucleus accumbens
Scaled Tags Per Million: 44.3
FF:10037-101F1 23-56 years, mixed 44.3
Putamen
Scaled Tags Per Million: 61.6
FF:10176-103C5 60 years, female 61.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 68.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 68.5
Samples: 4

Max nTPM: 72.9
Min nTPM: 63.5
Sample A Male 71.9
Sample B Male 65.8
Sample C Female 72.9
Sample D Female 63.5
Septum
nTPM: 48.5
Samples: 4

Max nTPM: 50.5
Min nTPM: 47.0
Sample A Male 47.8
Sample B Male 48.7
Sample C Female 50.5
Sample D Female 47.0
Ventral forebrain
nTPM: 58.7
Samples: 4

Max nTPM: 61.0
Min nTPM: 56.2
Sample A Male 61.0
Sample B Male 57.8
Sample C Female 59.9
Sample D Female 56.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.0
70445520 Antisense, RP_050614_04_A06, Mouse strain C57BL/6J (56 days, male) 5.0
Pallidum
Expression energy: 3.5
70445520 Antisense, RP_050614_04_A06, Mouse strain C57BL/6J (56 days, male) 3.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.