HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:29.0 nTPM
HPA:29.0 nTPM
GTEx:21.8 nTPM
FANTOM5:46.4 Scaled Tags Per Million
Mouse:51.8 nTPM
Allen mouse:6.7 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 29.0
Sample id Sample description nTPM
Hippocampus
nTPM: 28.2
1855 Male, age 76, left hemisphere 29.6
1898 Male, age 80, left hemisphere 29.3
2529 Female, age 94, left hemisphere 28.4
2621 Female, age 67, right hemisphere 28.4
2148 Female, age 91, left hemisphere 26.9
1911 Female, age 85, right hemisphere 26.4
Dentate gyrus
nTPM: 27.7
2010 Male, age 76, both hemispheres 29.2
2531 Female, age 67, both hemispheres 28.1
1927 Female, age 91, both hemispheres 27.9
2530 Female, age 94, left hemisphere 27.9
2528 Male, age 74, both hemispheres 26.7
2246 Female, age 85, both hemispheres 26.5
Entorhinal gyrus
nTPM: 28.1
2613 Female, age 94, left hemisphere 30.6
1787 Male, age 76, left hemisphere 29.6
2117 Female, age 91, right hemisphere 28.4
2764 Male, age 80, right hemisphere 28.4
1938 Female, age 85, left hemisphere 26.7
2686 Male, age 75, right hemisphere 25.0
Hippocampus, CA1
nTPM: 28.6
2749 Male, age 80, left hemisphere 30.6
1873 Female, age 85, both hemispheres 28.8
2527 Male, age 74, both hemispheres 28.2
2045 Male, age 76, both hemispheres 28.0
2082 Female, age 91, right hemisphere 27.5
Hippocampus, CA2
nTPM: 29.0
1963 Male, age 80, left hemisphere 32.9
1892 Male, age 76, both hemispheres 30.5
1940 Female, age 85, left hemisphere 28.5
2249 Male, age 74, both hemispheres 28.0
2113 Female, age 91, right hemisphere 27.7
2437 Female, age 94, left hemisphere 26.6
Hippocampus, CA3
nTPM: 28.6
2137 Male, age 80, left hemisphere 31.4
2436 Male, age 74, both hemispheres 30.1
1867 Male, age 76, both hemispheres 28.6
1891 Female, age 85, both hemispheres 27.5
2861 Female, age 67, both hemispheres 27.1
2620 Female, age 94, left hemisphere 26.8
Parahippocampal cortex
nTPM: 27.0
1850 Male, age 80, both hemispheres 29.4
1933 Female, age 85, both hemispheres 27.6
2245 Female, age 91, both hemispheres 27.6
2018 Male, age 76, both hemispheres 27.5
1990 Female, age 91, right hemisphere 27.2
2250 Female, age 67, right hemisphere 27.0
2532 Female, age 72, left hemisphere 26.4
2622 Female, age 67, right hemisphere 25.9
2693 Female, age 94, both hemispheres 25.8
2692 Male, age 74, both hemispheres 25.6
Perirhinal gyrus
nTPM: 28.7
1847 Female, age 91, left hemisphere 30.1
1841 Female, age 85, right hemisphere 29.1
2848 Male, age 76, right hemisphere 29.0
1794 Male, age 80, right hemisphere 28.1
2521 Female, age 94, right hemisphere 27.5
Subiculum
nTPM: 28.5
2438 Female, age 94, left hemisphere 35.7
1977 Female, age 85, both hemispheres 27.7
2042 Male, age 76, both hemispheres 27.4
2619 Male, age 74, both hemispheres 26.9
2729 Female, age 91, right hemisphere 26.8
1901 Male, age 80, both hemispheres 26.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 21.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 21.8
Samples: 197

Max nTPM: 50.1
Min nTPM: 6.8
Std nTPM: 6.5
Median nTPM: 20.5
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 50.1
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 46.6
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 40.2
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 39.3
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 37.7
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 37.4
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 36.3
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 35.6
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 34.2
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 33.3
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 33.1
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 46.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 46.4
FF:10169-103B7 60 years, female 50.2
FF:10153-102I9 76 years, female 42.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 51.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 50.2
Samples: 4

Max nTPM: 54.2
Min nTPM: 45.0
Sample A Male 48.3
Sample B Male 45.0
Sample C Female 54.2
Sample D Female 53.4
Hippocampal formation
nTPM: 51.8
Samples: 4

Max nTPM: 55.4
Min nTPM: 48.5
Sample A Male 52.9
Sample B Male 50.5
Sample C Female 48.5
Sample D Female 55.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.7
70445520 Antisense, RP_050614_04_A06, Mouse strain C57BL/6J (56 days, male) 6.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.