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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:194.4 nTPM
HPA:194.4 nTPM
GTEx:157.3 nTPM
FANTOM5:381.5 Scaled Tags Per Million
Pig:136.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 194.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 186.8
2048 Male, age 55, midline 191.6
2816 Male, age 47, midline 189.5
1981 Female, age 72, midline 188.8
2194 Female, age 79, both hemispheres 187.3
2565 Male, age 75, midline 176.8
Cervical spinal cord, dorsal horn
nTPM: 194.4
2296 Male, age 66, both hemispheres 237.7
2173 Female, age 72, unknown 200.3
2069 Male, age 47, both hemispheres 199.6
1877 Male, age 55, unknown 183.9
2297 Male, age 75, both hemispheres 176.2
2721 Male, age 90, both hemispheres 168.6
Cervical spinal cord, ventral horn
nTPM: 183.4
2098 Female, age 72, unknown 230.9
2820 Female, age 79, both hemispheres 185.4
2068 Male, age 55, unknown 176.1
2809 Male, age 90, both hemispheres 174.3
2295 Male, age 66, both hemispheres 166.9
2480 Male, age 75, both hemispheres 166.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 157.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 157.3
Samples: 159

Max nTPM: 308.5
Min nTPM: 67.2
Std nTPM: 47.8
Median nTPM: 147.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 308.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 287.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 274.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 268.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 262.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 257.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 256.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 252.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 250.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 238.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 236.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 232.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 231.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 230.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 230.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 225.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 221.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 221.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 220.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 220.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 213.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 212.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 212.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 208.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 206.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 205.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 203.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 202.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 201.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 199.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 197.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 195.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 194.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 193.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 193.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 192.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 191.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 186.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 186.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 186.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 185.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 184.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 184.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 183.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 182.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 181.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 181.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 180.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 179.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 177.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 176.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 176.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 174.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 173.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 171.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 171.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 170.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 170.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 169.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 168.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 167.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 166.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 165.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 165.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 164.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 163.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 161.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 160.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 158.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 158.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 157.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 155.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 155.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 155.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 155.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 151.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 151.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 149.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 148.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 147.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 147.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 146.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 146.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 145.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 144.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 144.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 143.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 143.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 143.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 142.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 142.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 141.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 141.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 141.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 140.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 139.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 139.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 137.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 136.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 135.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 134.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 134.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 134.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 132.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 132.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 131.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 131.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 130.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 129.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 129.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 128.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 126.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 126.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 125.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 124.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 124.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 123.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 123.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 123.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 122.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 121.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 120.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 119.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 119.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 118.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 118.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 116.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 116.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 116.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 115.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 115.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 113.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 113.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 111.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 110.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 110.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 110.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 109.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 108.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 107.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 106.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 105.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 99.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 98.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 96.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 94.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 93.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 91.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 91.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 91.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 86.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 85.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 84.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 83.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 82.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 81.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 80.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 76.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 67.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 381.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 381.5
FF:10159-103A6 76 years, female 423.2
FF:10181-103D1 60 years, female 339.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 136.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 126.3
Samples: 4

Max nTPM: 131.3
Min nTPM: 122.2
Sample A Female 122.2
Sample B Female 127.2
Sample C Male 131.3
Sample D Male 124.3
Ventral spinal cord
nTPM: 136.7
Samples: 4

Max nTPM: 149.0
Min nTPM: 130.5
Sample A Female 133.3
Sample B Female 133.9
Sample C Male 130.5
Sample D Male 149.0

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