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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:436.7 nTPM
HPA:436.7 nTPM
GTEx:345.0 nTPM
FANTOM5:114.0 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA035010
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 436.7
overview
Male, age 65
Small intestine sample 232
nTPM: 424.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 476.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 359.1
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 486.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 345.0
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 345.0
Samples: 187

Max nTPM: 723.8
Min nTPM: 111.4
Std nTPM: 124.4
Median nTPM: 312.9
GTEX-YFCO-1326-SM-664NV 40-49 years, male 723.8
GTEX-111YS-1426-SM-5GID8 60-69 years, male 707.6
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 664.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 658.4
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 626.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 623.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 617.8
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 613.1
GTEX-1122O-1326-SM-5H11F 60-69 years, female 594.3
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 584.3
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 574.4
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 568.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 557.7
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 549.9
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 544.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 541.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 536.8
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 534.7
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 530.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 515.9
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 515.6
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 513.5
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 511.7
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 499.3
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 495.1
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 490.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 489.4
GTEX-ZTSS-0926-SM-59865 40-49 years, male 488.7
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 484.0
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 477.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 474.7
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 472.4
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 471.3
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 470.6
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 466.2
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 462.3
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 460.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 460.1
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 452.7
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 451.5
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 449.8
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 449.6
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 445.4
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 445.0
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 445.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 443.4
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 437.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 435.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 425.2
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 422.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 419.0
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 418.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 412.4
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 409.9
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 408.1
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 400.2
GTEX-14PKU-1626-SM-6871C 40-49 years, female 393.0
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 386.1
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 384.2
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 381.4
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 380.0
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 369.5
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 367.5
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 362.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 362.8
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 358.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 358.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 357.0
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 355.9
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 354.5
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 353.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 352.1
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 351.6
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 350.9
GTEX-1192X-2526-SM-59868 50-59 years, male 350.8
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 348.5
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 347.9
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 346.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 344.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 340.2
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 340.1
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 337.6
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 336.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 335.3
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 332.2
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 330.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 330.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 328.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 327.6
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 326.4
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 326.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 318.3
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 313.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 312.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 312.3
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 311.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 311.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 311.0
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 307.0
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 306.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 306.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 306.1
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 305.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 303.1
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 302.6
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 301.1
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 298.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 297.3
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 297.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 294.8
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 293.4
GTEX-13O61-1326-SM-5KM31 60-69 years, male 293.1
GTEX-144GM-1026-SM-79OKU 20-29 years, male 291.9
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 289.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 286.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 285.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 284.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 282.5
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 281.7
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 280.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 279.6
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 278.4
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 277.3
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 275.7
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 274.4
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 274.3
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 269.4
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 269.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 265.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 265.3
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 263.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 263.1
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 261.6
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 260.8
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 260.5
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 259.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 253.5
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 253.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 249.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 248.3
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 247.6
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 246.3
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 245.8
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 244.5
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 243.7
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 243.7
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 243.6
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 240.6
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 240.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 240.3
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 238.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 238.9
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 238.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 237.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 234.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 233.3
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 223.6
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 223.5
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 221.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 220.7
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 218.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 216.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 214.7
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 214.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 214.3
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 211.4
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 210.6
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 209.1
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 203.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 203.5
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 202.4
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 201.2
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 200.2
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 198.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 192.2
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 185.0
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 183.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 182.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 181.0
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 179.0
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 178.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 178.4
GTEX-183FY-1626-SM-793D8 20-29 years, male 170.0
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 165.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 162.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 144.7
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 111.4
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 114.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 114.0
FF:10024-101D6 15,40,85 years, mixed 114.0

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