We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SLC25A6
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • SLC25A6
TISSUE PRIMARY DATA PONS AND MEDULLA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
PONS AND MEDULLA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:228.0 nTPM
HPA:228.0 nTPM
FANTOM5:267.6 Scaled Tags Per Million
Pig:489.7 nTPM

PONS AND MEDULLA - HPA Brain RNA-seq
Max nTPM 228.0
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 206.0
1984 Male, age 76, both hemispheres 213.7
2301 Female, age 85, both hemispheres 206.9
2090 Male, age 80, both hemispheres 206.0
2188 Female, age 91, both hemispheres 197.4
Area postrema
nTPM: 207.8
2799 Male, age 61, both hemispheres 220.1
2306 Male, age 80, both hemispheres 214.2
2054 Male, age 76, both hemispheres 189.1
Cuneate nuclei
nTPM: 203.1
2131 Male, age 76, both hemispheres 216.5
2376 Male, age 61, both hemispheres 198.1
2381 Male, age 80, both hemispheres 194.7
Dorsal cochlear nucleus
nTPM: 213.1
2802 Male, age 74, right hemisphere 227.3
2058 Male, age 76, both hemispheres 215.5
2378 Male, age 80, both hemispheres 213.3
2370 Male, age 61, both hemispheres 205.7
2187 Female, age 91, both hemispheres 203.5
Dorsal medullary reticular nucleus
nTPM: 203.3
2040 Female, age 85, both hemispheres 208.8
2088 Male, age 76, both hemispheres 203.8
2373 Male, age 61, both hemispheres 197.2
Dorsal motor vagal complex
nTPM: 215.2
2643 Male, age 74, both hemispheres 235.6
2797 Male, age 61, both hemispheres 233.8
2133 Female, age 91, both hemispheres 214.9
2844 Male, age 55, unknown 213.8
2000 Male, age 74, unknown 212.3
2185 Male, age 76, both hemispheres 209.2
2807 Female, age 85, both hemispheres 206.3
2813 Female, age 72, unknown 195.4
Dorsal tegmental nucleus
nTPM: 204.6
2083 Male, age 80, both hemispheres 213.3
2326 Male, age 74, both hemispheres 205.7
2358 Male, age 61, both hemispheres 202.3
1936 Male, age 76, left hemisphere 197.1
Dorsolateral tegmental area
nTPM: 209.6
2141 Male, age 76, both hemispheres 225.2
2337 Male, age 61, both hemispheres 219.0
2654 Male, age 80, both hemispheres 211.9
2360 Male, age 74, both hemispheres 196.0
2751 Female, age 85, both hemispheres 195.9
Gigantocellular reticular nuclei, medullary
nTPM: 206.9
2462 Male, age 74, both hemispheres 225.8
2310 Male, age 80, both hemispheres 214.6
2022 Male, age 76, right hemisphere 206.3
2314 Male, age 61, both hemispheres 202.0
1876 Female, age 85, both hemispheres 196.9
2387 Female, age 91, both hemispheres 196.0
Gigantocellular reticular nuclei, pars
nTPM: 213.4
2168 Male, age 76, both hemispheres 233.7
2084 Female, age 85, both hemispheres 216.0
2330 Male, age 80, both hemispheres 207.5
2336 Male, age 61, both hemispheres 204.9
2706 Male, age 80, both hemispheres 204.9
Inferior olive
nTPM: 209.4
2628 Female, age 91, both hemispheres 214.5
2563 Male, age 74, both hemispheres 212.3
2085 Female, age 85, both hemispheres 210.5
2379 Male, age 80, both hemispheres 205.6
2178 Male, age 61, both hemispheres 204.0
Kolliker-Fuse nucleus
nTPM: 205.4
2793 Female, age 91, left hemisphere 211.0
2163 Male, age 80, both hemispheres 209.3
2315 Male, age 76, right hemisphere 196.0
Lateral lemniscal nuclei
nTPM: 213.4
2169 Male, age 76, both hemispheres 227.6
2746 Female, age 85, left hemisphere 224.9
2453 Male, age 74, right hemisphere 211.2
2320 Female, age 91, left hemisphere 209.9
2036 Male, age 80, both hemispheres 193.3
Lateral medullary reticular nucleus
nTPM: 205.3
2044 Male, age 76, both hemispheres 217.0
2804 Female, age 91, both hemispheres 210.7
2190 Female, age 85, both hemispheres 204.5
2374 Male, age 61, both hemispheres 203.5
2852 Male, age 80, both hemispheres 200.0
2305 Male, age 74, both hemispheres 196.4
Lateral parabrachial nucleus
nTPM: 205.4
2139 Female, age 85, right hemisphere 224.0
2790 Male, age 61, both hemispheres 205.8
2013 Male, age 80, both hemispheres 203.6
2792 Male, age 76, both hemispheres 188.2
Lateral vestibular nucleus
nTPM: 208.2
2311 Male, age 80, both hemispheres 210.0
2184 Male, age 76, both hemispheres 206.4
Locus coeruleus
nTPM: 203.5
2720 Male, age 74, both hemispheres 212.0
2162 Male, age 80, both hemispheres 211.7
2123 Female, age 91, both hemispheres 208.9
1980 Male, age 76, both hemispheres 207.6
2317 Female, age 72, unknown 203.1
2014 Male, age 55, unknown 200.0
2788 Male, age 74, unknown 180.9
Medial olivary nucleus
nTPM: 193.4
2851 Male, age 80, both hemispheres 200.3
2138 Female, age 91, both hemispheres 199.2
1943 Male, age 61, both hemispheres 192.5
1962 Male, age 76, both hemispheres 181.4
Medial parabrachial nucleus
nTPM: 205.2
2156 Male, age 61, both hemispheres 216.4
2170 Female, age 91, both hemispheres 207.0
2786 Male, age 76, both hemispheres 205.1
2463 Female, age 85, right hemisphere 200.8
2854 Male, age 80, both hemispheres 196.8
Medial periolivary nuclei
nTPM: 217.0
2063 Male, age 76, both hemispheres 243.2
2171 Female, age 85, both hemispheres 237.4
2458 Female, age 91, both hemispheres 209.4
2081 Male, age 80, both hemispheres 202.9
2791 Male, age 74, right hemisphere 192.0
Medial vestibular nucleus
nTPM: 210.6
2624 Male, age 61, both hemispheres 221.0
2134 Male, age 76, both hemispheres 214.4
2093 Male, age 80, both hemispheres 210.6
2743 Female, age 85, both hemispheres 208.3
2803 Female, age 91, both hemispheres 206.0
2801 Male, age 74, both hemispheres 203.2
Motor facial nucleus
nTPM: 217.8
2062 Male, age 76, both hemispheres 250.5
2795 Female, age 91, both hemispheres 225.4
2697 Female, age 85, both hemispheres 215.5
2365 Male, age 74, right hemisphere 209.2
2327 Male, age 80, both hemispheres 206.4
2126 Male, age 61, both hemispheres 199.8
Motor hypoglossal nucleus
nTPM: 205.2
2132 Female, age 85, both hemispheres 219.2
2125 Female, age 91, both hemispheres 211.1
2182 Male, age 80, both hemispheres 210.5
2461 Male, age 61, both hemispheres 193.0
2277 Male, age 76, both hemispheres 192.4
Motor trigeminal nucleus
nTPM: 212.4
2335 Male, age 61, both hemispheres 216.9
2560 Male, age 74, both hemispheres 215.1
2079 Male, age 80, both hemispheres 211.0
2309 Male, age 76, both hemispheres 210.1
2321 Female, age 91, both hemispheres 208.7
Nuclei of the trapezoid body
nTPM: 228.0
1983 Male, age 76, both hemispheres 259.2
2735 Female, age 85, both hemispheres 246.6
2159 Male, age 61, both hemispheres 215.3
2368 Female, age 91, both hemispheres 212.6
2166 Male, age 80, both hemispheres 206.1
Nucleus ambiguus
nTPM: 220.3
2096 Female, age 85, both hemispheres 248.9
2071 Male, age 76, both hemispheres 191.8
Nucleus cuneatus
nTPM: 213.0
2805 Female, age 91, both hemispheres 227.3
2562 Male, age 61, both hemispheres 220.6
2564 Male, age 74, both hemispheres 217.9
2100 Male, age 76, both hemispheres 213.1
2808 Female, age 85, both hemispheres 206.8
2380 Male, age 80, both hemispheres 192.1
Nucleus gracilis
nTPM: 210.7
2299 Female, age 85, both hemispheres 222.4
2382 Male, age 80, both hemispheres 204.9
2627 Male, age 74, both hemispheres 204.8
Nucleus raphe magnus
nTPM: 222.6
2172 Female, age 85, both hemispheres 255.9
2051 Male, age 76, both hemispheres 225.1
2160 Male, age 61, both hemispheres 222.9
2455 Male, age 74, both hemispheres 214.9
2328 Male, age 80, both hemispheres 212.4
2459 Female, age 91, both hemispheres 204.6
Nucleus raphe obscurus
nTPM: 195.0
2845 Female, age 85, midline 200.5
2800 Male, age 61, midline 199.9
2142 Male, age 76, midline 184.7
Nucleus raphe pallidus
nTPM: 195.7
1924 Male, age 61, midline 201.8
2183 Male, age 80, midline 201.4
2145 Male, age 76, midline 183.8
Nucleus tractus solitarii
nTPM: 192.8
2307 Male, age 80, both hemispheres 205.7
2656 Male, age 76, both hemispheres 200.2
2191 Female, age 85, both hemispheres 196.4
2144 Female, age 91, right hemisphere 169.1
Paramedian reticular nucleus
nTPM: 199.7
2050 Female, age 85, both hemispheres 211.8
2057 Male, age 80, both hemispheres 205.9
2313 Male, age 61, both hemispheres 205.3
2052 Male, age 76, both hemispheres 175.7
Parvicellular reticular nuclei
nTPM: 210.7
2558 Male, age 74, both hemispheres 227.6
2119 Male, age 80, both hemispheres 202.3
2095 Male, age 76, both hemispheres 202.1
Parvicellular reticular nuclei, medullary
nTPM: 215.7
2091 Female, age 85, both hemispheres 217.7
2181 Male, age 80, left hemisphere 217.7
2189 Female, age 91, both hemispheres 211.8
Peritrigeminal nucleus
nTPM: 206.7
2067 Female, age 85, both hemispheres 217.0
2136 Male, age 76, both hemispheres 203.3
2179 Male, age 61, both hemispheres 199.7
Pontine nuclei
nTPM: 220.7
2787 Female, age 85, both hemispheres 273.8
1968 Male, age 76, left hemisphere 244.3
1863 Male, age 55, unknown 222.3
2115 Male, age 80, left hemisphere 212.0
2727 Male, age 61, right hemisphere 209.9
2109 Female, age 72, unknown 207.6
2319 Female, age 91, both hemispheres 207.6
2454 Male, age 74, left hemisphere 188.2
Pontine raphe nucleus
nTPM: 217.5
2122 Female, age 85, midline 224.2
2853 Male, age 76, midline 210.8
Posteroventral cochlear nucleus
nTPM: 205.3
2752 Female, age 85, both hemispheres 220.2
2371 Male, age 61, both hemispheres 211.1
2070 Male, age 76, both hemispheres 203.8
2135 Female, age 91, both hemispheres 199.8
2341 Male, age 80, both hemispheres 191.7
Prepositus hypoglossal nucleus
nTPM: 210.7
2086 Male, age 80, both hemispheres 216.2
2855 Female, age 85, right hemisphere 205.2
Principal sensory trigeminal nucleus
nTPM: 214.6
2158 Male, age 61, both hemispheres 227.5
2324 Male, age 76, both hemispheres 215.8
2008 Male, age 80, left hemisphere 209.6
2367 Female, age 91, left hemisphere 205.3
Reticular pontine nucleus, caudal
nTPM: 210.7
2092 Male, age 76, both hemispheres 221.9
2332 Male, age 80, right hemisphere 216.5
2457 Female, age 91, both hemispheres 202.9
2559 Male, age 74, both hemispheres 201.4
Reticular pontine nucleus, oral
nTPM: 204.3
2167 Male, age 76, both hemispheres 211.5
2012 Female, age 85, both hemispheres 207.4
2366 Female, age 91, both hemispheres 204.8
1939 Male, age 80, both hemispheres 203.6
2361 Male, age 74, both hemispheres 194.4
Reticulotegmental nucleus
nTPM: 211.0
2452 Male, age 74, both hemispheres 220.7
2325 Male, age 76, both hemispheres 214.9
2322 Female, age 91, both hemispheres 205.1
2333 Male, age 80, both hemispheres 203.3
Spinal trigeminal nucleus, caudal
nTPM: 209.9
2447 Male, age 76, both hemispheres 224.1
2642 Male, age 74, both hemispheres 211.5
2390 Female, age 91, both hemispheres 209.7
2308 Male, age 80, both hemispheres 206.1
2312 Male, age 61, both hemispheres 198.0
Spinal trigeminal nucleus, interpolar
nTPM: 213.0
2066 Male, age 76, right hemisphere 223.5
2033 Male, age 80, both hemispheres 217.0
2625 Male, age 61, both hemispheres 212.4
2389 Female, age 91, both hemispheres 208.7
2386 Female, age 85, both hemispheres 203.3
Spinal trigeminal nucleus, oral
nTPM: 211.3
1978 Male, age 76, both hemispheres 213.3
2164 Male, age 80, both hemispheres 212.0
2737 Female, age 85, both hemispheres 208.5
Spinal vestibular nucleus
nTPM: 214.8
2748 Male, age 76, both hemispheres 219.9
2780 Male, age 80, both hemispheres 219.7
2384 Male, age 74, both hemispheres 216.9
2186 Female, age 91, both hemispheres 212.4
2796 Male, age 61, both hemispheres 212.1
2806 Female, age 85, both hemispheres 207.9
Subcoeruleus area
nTPM: 210.2
2451 Male, age 74, both hemispheres 227.7
2323 Female, age 91, left hemisphere 218.7
2089 Male, age 76, left hemisphere 215.8
1958 Male, age 80, both hemispheres 199.2
2369 Female, age 85, left hemisphere 189.6
Superior olive
nTPM: 211.1
2020 Male, age 76, both hemispheres 222.1
2561 Female, age 91, both hemispheres 220.6
1875 Female, age 85, both hemispheres 215.0
2329 Male, age 80, right hemisphere 204.4
2364 Male, age 74, right hemisphere 193.5
Superior vestibular nucleus
nTPM: 200.1
2061 Male, age 76, both hemispheres 207.1
2015 Male, age 80, both hemispheres 205.5
2383 Male, age 74, both hemispheres 187.7
Ventral medullary reticular nucleus
nTPM: 208.0
2060 Male, age 76, both hemispheres 215.2
2372 Male, age 61, both hemispheres 200.8
Ventral periolivary nuclei
nTPM: 221.5
2130 Female, age 85, both hemispheres 236.5
2165 Male, age 80, both hemispheres 220.0
2794 Female, age 91, left hemisphere 219.4
2023 Male, age 76, both hemispheres 209.9
Ventrolateral medulla, A1-C1 cell groups
nTPM: 209.5
2302 Female, age 91, both hemispheres 222.5
2741 Female, age 85, both hemispheres 213.4
2118 Male, age 80, both hemispheres 207.4
1986 Male, age 76, both hemispheres 202.4
2180 Male, age 61, both hemispheres 201.8
Ventrolateral tegmental area, A5 NE cell group
nTPM: 209.7
1959 Male, age 76, both hemispheres 216.6
2449 Male, age 74, both hemispheres 214.9
2161 Male, age 80, both hemispheres 209.9
2840 Female, age 85, both hemispheres 209.4
2456 Female, age 91, both hemispheres 207.6
2359 Male, age 61, both hemispheres 199.5

PONS AND MEDULLA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 267.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 267.6
FF:10182-103D2 60 years, female 301.5
FF:10165-103B3 76 years, female 233.8
Medulla oblongata
Scaled Tags Per Million: 205.4
FF:10174-103C3 60 years, female 348.6
FF:10155-103A2 76 years, female 267.6
FF:10038-101F2 18-64 years, mixed 0.0
Pons
Scaled Tags Per Million: 0.0
FF:10033-101E6 18-54 years, mixed 0.0

PONS AND MEDULLA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 489.7
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 432.9
Samples: 4

Max nTPM: 473.9
Min nTPM: 385.1
Sample A Female 385.1
Sample B Female 449.7
Sample C Male 473.9
Sample D Male 422.8
Pons
nTPM: 489.7
Samples: 4

Max nTPM: 570.0
Min nTPM: 343.9
Sample A Female 562.9
Sample B Female 343.9
Sample C Male 481.9
Sample D Male 570.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.