MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:61.4 nTPM
HPA:61.4 nTPM
GTEx:64.3 nTPM
FANTOM5:29.0 Scaled Tags Per Million
Pig:27.2 nTPM
Mouse:23.5 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 61.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 58.9
1870 Female, age 42, unknown 61.6
2411 Female, age 72, unknown 60.8
2828 Female, age 72, unknown 60.2
1827 Male, age 72, unknown 59.9
2666 Male, age 74, left hemisphere 59.1
2219 Male, age 76, both hemispheres 58.8
1833 Male, age 53, unknown 58.4
1830 Male, age 51, unknown 58.1
2019 Male, age 18, unknown 57.9
2586 Male, age 75, left hemisphere 54.7
Dorsal raphe nucleus
nTPM: 59.8
2298 Female, age 72, unknown 62.4
2750 Male, age 76, both hemispheres 60.6
2016 Female, age 72, unknown 60.1
1828 Male, age 53, unknown 59.3
2047 Male, age 72, unknown 56.4
Inferior colliculus
nTPM: 58.7
2097 Female, age 72, unknown 60.2
1848 Female, age 42, unknown 58.8
1890 Male, age 53, unknown 58.8
2849 Male, age 72, unknown 57.2
Median raphe nucleus
nTPM: 59.7
2220 Male, age 76, midline 59.7
Pedunculopontine tegmental nucleus
nTPM: 61.4
2338 Male, age 61, both hemispheres 62.3
2334 Male, age 80, both hemispheres 61.7
1921 Female, age 85, both hemispheres 60.0
Periaquaductal grey, anterior
nTPM: 59.9
1947 Male, age 18, unknown 61.1
2502 Female, age 75, unknown 59.6
1795 Male, age 51, unknown 58.9
Periaquaductal grey, dorsal
nTPM: 59.1
2850 Male, age 76, both hemispheres 60.6
1831 Male, age 72, unknown 59.1
1840 Male, age 53, unknown 58.3
2464 Female, age 72, unknown 58.3
Periaquaductal grey, lateral
nTPM: 59.6
2272 Male, age 74, both hemispheres 61.6
2140 Male, age 76, both hemispheres 58.8
2053 Male, age 18, unknown 58.5
Pretectal area
nTPM: 60.0
2273 Male, age 74, both hemispheres 65.2
2667 Female, age 75, unknown 62.3
2224 Female, age 72, unknown 60.5
1817 Female, age 42, unknown 60.2
1944 Female, age 72, unknown 60.1
1815 Male, age 53, unknown 59.5
1816 Male, age 51, unknown 59.5
2316 Male, age 76, right hemisphere 59.4
2825 Male, age 18, unknown 59.0
2007 Male, age 72, unknown 58.6
2407 Male, age 75, both hemispheres 55.2
Red nucleus
nTPM: 59.8
1821 Female, age 72, unknown 62.9
1904 Male, age 53, unknown 62.6
1954 Female, age 42, unknown 61.4
1865 Male, age 51, unknown 61.3
2227 Male, age 72, unknown 61.2
2823 Male, age 76, right hemisphere 60.8
2503 Female, age 72, unknown 60.7
2769 Male, age 72, unknown 60.5
2725 Female, age 75, unknown 58.5
2588 Male, age 74, left hemisphere 58.1
2785 Male, age 18, unknown 58.0
2584 Male, age 75, left hemisphere 51.9
Substantia nigra
nTPM: 60.3
1916 Female, age 42, unknown 64.3
2699 Male, age 18, unknown 62.7
1851 Male, age 51, unknown 62.5
2241 Male, age 72, unknown 60.9
1889 Female, age 72, unknown 60.5
2590 Female, age 75, unknown 59.4
2409 Female, age 72, unknown 59.0
1941 Male, age 53, unknown 58.9
2665 Male, age 74, both hemispheres 58.8
2583 Male, age 75, right hemisphere 56.3
Superior colliculus
nTPM: 59.3
1995 Male, age 72, unknown 61.4
2587 Male, age 74, left hemisphere 61.0
1796 Male, age 53, unknown 60.7
1913 Female, age 42, unknown 60.7
2261 Male, age 18, unknown 60.2
2087 Female, age 72, unknown 58.9
2668 Female, age 75, unknown 58.9
1895 Male, age 76, right hemisphere 58.4
1839 Male, age 51, unknown 57.6
2664 Male, age 75, both hemispheres 55.3
Ventral tegmental area
nTPM: 60.9
1915 Female, age 42, unknown 62.2
2218 Male, age 76, both hemispheres 62.1
2410 Female, age 72, unknown 61.2
1942 Male, age 51, unknown 60.7
2223 Female, age 72, unknown 59.8
2021 Male, age 53, unknown 59.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 64.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 64.3
Samples: 139

Max nTPM: 140.9
Min nTPM: 37.3
Std nTPM: 15.7
Median nTPM: 61.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 140.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 112.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 111.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 101.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 98.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 97.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 97.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 96.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 93.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 92.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 89.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.0
FF:10158-103A5 76 years, female 29.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 27.2
Pig sample Sample description nTPM
Midbrain
nTPM: 27.2
Samples: 4

Max nTPM: 32.9
Min nTPM: 21.0
Sample A Female 32.9
Sample B Female 26.6
Sample C Male 28.4
Sample D Male 21.0
Periaqueductal gray
nTPM: 23.8
Samples: 3

Max nTPM: 29.0
Min nTPM: 20.0
Sample B Female 22.4
Sample C Male 29.0
Sample D Male 20.0
Substantia nigra
nTPM: 25.3
Samples: 4

Max nTPM: 31.9
Min nTPM: 18.7
Sample A Female 31.9
Sample B Female 25.2
Sample C Male 25.2
Sample D Male 18.7
Superior colliculi
nTPM: 26.6
Samples: 4

Max nTPM: 30.7
Min nTPM: 24.0
Sample A Female 30.7
Sample B Female 27.7
Sample C Male 24.0
Sample D Male 24.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 23.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.5
Samples: 4

Max nTPM: 26.3
Min nTPM: 21.3
Sample A Male 26.3
Sample B Male 21.7
Sample C Female 21.3
Sample D Female 24.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68637515 Antisense, RP_050126_01_A10, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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