MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:39.8 nTPM
HPA:39.8 nTPM
GTEx:32.2 nTPM
FANTOM5:31.9 Scaled Tags Per Million
Pig:12.7 nTPM
Mouse:61.2 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 39.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.7
2666 Male, age 74, left hemisphere 45.4
2586 Male, age 75, left hemisphere 44.0
2828 Female, age 72, unknown 40.3
1870 Female, age 42, unknown 40.2
2411 Female, age 72, unknown 40.0
1827 Male, age 72, unknown 39.7
1833 Male, age 53, unknown 38.8
1830 Male, age 51, unknown 36.6
2019 Male, age 18, unknown 36.5
2219 Male, age 76, both hemispheres 36.0
Dorsal raphe nucleus
nTPM: 38.2
2298 Female, age 72, unknown 40.1
2047 Male, age 72, unknown 39.0
1828 Male, age 53, unknown 38.0
2750 Male, age 76, both hemispheres 37.3
2016 Female, age 72, unknown 36.8
Inferior colliculus
nTPM: 36.3
2849 Male, age 72, unknown 37.2
1890 Male, age 53, unknown 36.3
1848 Female, age 42, unknown 35.8
2097 Female, age 72, unknown 35.7
Median raphe nucleus
nTPM: 37.4
2220 Male, age 76, midline 37.4
Pedunculopontine tegmental nucleus
nTPM: 36.8
2334 Male, age 80, both hemispheres 37.9
1921 Female, age 85, both hemispheres 36.5
2338 Male, age 61, both hemispheres 35.8
Periaquaductal grey, anterior
nTPM: 38.8
1947 Male, age 18, unknown 39.7
1795 Male, age 51, unknown 38.4
2502 Female, age 75, unknown 38.3
Periaquaductal grey, dorsal
nTPM: 36.8
1831 Male, age 72, unknown 37.1
2464 Female, age 72, unknown 36.9
1840 Male, age 53, unknown 36.6
2850 Male, age 76, both hemispheres 36.4
Periaquaductal grey, lateral
nTPM: 35.8
2053 Male, age 18, unknown 37.0
2140 Male, age 76, both hemispheres 35.2
2272 Male, age 74, both hemispheres 35.2
Pretectal area
nTPM: 37.4
2825 Male, age 18, unknown 39.8
2407 Male, age 75, both hemispheres 39.1
1817 Female, age 42, unknown 39.0
1816 Male, age 51, unknown 38.7
1815 Male, age 53, unknown 38.6
2667 Female, age 75, unknown 37.4
2007 Male, age 72, unknown 37.1
1944 Female, age 72, unknown 36.6
2224 Female, age 72, unknown 36.6
2316 Male, age 76, right hemisphere 34.7
2273 Male, age 74, both hemispheres 33.8
Red nucleus
nTPM: 39.2
2584 Male, age 75, left hemisphere 42.4
2588 Male, age 74, left hemisphere 40.7
1865 Male, age 51, unknown 40.2
2725 Female, age 75, unknown 39.8
1904 Male, age 53, unknown 39.4
1821 Female, age 72, unknown 39.1
2769 Male, age 72, unknown 38.7
1954 Female, age 42, unknown 38.3
2503 Female, age 72, unknown 38.3
2823 Male, age 76, right hemisphere 38.3
2227 Male, age 72, unknown 38.0
2785 Male, age 18, unknown 37.5
Substantia nigra
nTPM: 39.8
1916 Female, age 42, unknown 42.3
1851 Male, age 51, unknown 42.2
2583 Male, age 75, right hemisphere 41.8
2699 Male, age 18, unknown 41.0
1941 Male, age 53, unknown 39.3
2241 Male, age 72, unknown 39.2
2665 Male, age 74, both hemispheres 38.8
1889 Female, age 72, unknown 38.1
2409 Female, age 72, unknown 37.6
2590 Female, age 75, unknown 37.2
Superior colliculus
nTPM: 38.4
2664 Male, age 75, both hemispheres 41.6
2668 Female, age 75, unknown 40.9
1913 Female, age 42, unknown 38.6
1796 Male, age 53, unknown 38.5
1995 Male, age 72, unknown 38.1
1839 Male, age 51, unknown 38.0
1895 Male, age 76, right hemisphere 37.6
2261 Male, age 18, unknown 37.2
2087 Female, age 72, unknown 37.0
2587 Male, age 74, left hemisphere 36.9
Ventral tegmental area
nTPM: 38.9
1915 Female, age 42, unknown 41.4
2410 Female, age 72, unknown 40.0
2021 Male, age 53, unknown 38.7
2223 Female, age 72, unknown 38.4
1942 Male, age 51, unknown 38.0
2218 Male, age 76, both hemispheres 37.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 32.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.2
Samples: 139

Max nTPM: 56.8
Min nTPM: 20.3
Std nTPM: 5.4
Median nTPM: 31.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 56.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 53.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 45.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 45.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 45.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 42.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 42.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 40.8
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 40.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 39.6
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 39.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.9
FF:10158-103A5 76 years, female 31.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 12.7
Pig sample Sample description nTPM
Midbrain
nTPM: 12.7
Samples: 4

Max nTPM: 17.1
Min nTPM: 10.5
Sample A Female 17.1
Sample B Female 12.4
Sample C Male 10.6
Sample D Male 10.5
Periaqueductal gray
nTPM: 11.1
Samples: 3

Max nTPM: 12.2
Min nTPM: 10.3
Sample B Female 10.8
Sample C Male 12.2
Sample D Male 10.3
Substantia nigra
nTPM: 12.7
Samples: 4

Max nTPM: 15.9
Min nTPM: 10.8
Sample A Female 15.9
Sample B Female 10.8
Sample C Male 12.8
Sample D Male 11.2
Superior colliculi
nTPM: 12.0
Samples: 4

Max nTPM: 14.2
Min nTPM: 10.3
Sample A Female 14.2
Sample B Female 10.3
Sample C Male 11.6
Sample D Male 12.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 61.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 61.2
Samples: 4

Max nTPM: 66.2
Min nTPM: 58.0
Sample A Male 58.6
Sample B Male 58.0
Sample C Female 66.2
Sample D Female 61.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
80514013 Antisense, RP_071213_02_E06, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.