BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:2.8 nTPM
HPA:2.8 nTPM
GTEx:2.2 nTPM
FANTOM5:2.4 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA044983
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 2.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 2.6
1781 Male, age 74, unknown 3.1
2289 Male, age 61, right hemisphere 3.1
2846 Female, age 79, unknown 3.0
1857 Female, age 85, left hemisphere 2.7
2481 Female, age 94, left hemisphere 2.6
2290 Female, age 72, unknown 2.3
1854 Male, age 80, left hemisphere 2.1
2288 Male, age 75, left hemisphere 2.0
Claustrum
nTPM: 2.3
2196 Female, age 79, unknown 2.9
1956 Male, age 74, unknown 2.5
2292 Female, age 85, both hemispheres 2.5
2198 Male, age 80, both hemispheres 2.4
2392 Female, age 94, both hemispheres 2.3
2568 Male, age 61, both hemispheres 2.1
2645 Female, age 72, unknown 2.1
2284 Female, age 91, both hemispheres 1.9
2491 Male, age 75, both hemispheres 1.9
Globus pallidus, externus
nTPM: 2.8
2395 Male, age 75, both hemispheres 3.4
1996 Male, age 80, right hemisphere 3.0
2772 Female, age 79, unknown 2.9
2567 Female, age 72, unknown 2.5
2646 Male, age 61, right hemisphere 2.1
Globus pallidus, internus
nTPM: 2.6
2037 Male, age 80, right hemisphere 3.2
2778 Female, age 91, both hemispheres 2.8
2483 Female, age 94, right hemisphere 2.7
2111 Female, age 85, right hemisphere 2.6
1818 Male, age 74, unknown 2.5
2566 Female, age 72, unknown 2.3
2287 Male, age 75, right hemisphere 2.0
Nucleus accumbens
nTPM: 2.4
1806 Female, age 85, left hemisphere 2.7
1856 Female, age 91, right hemisphere 2.7
2732 Male, age 80, right hemisphere 2.7
1783 Male, age 74, unknown 2.5
2698 Female, age 72, unknown 2.5
2391 Female, age 94, left hemisphere 2.4
2824 Male, age 61, right hemisphere 2.1
2286 Male, age 75, left hemisphere 1.8
Nucleus basalis of Meynert
nTPM: 2.4
2821 Male, age 75, both hemispheres 2.7
2393 Male, age 80, right hemisphere 2.5
2484 Female, age 94, left hemisphere 2.2
2569 Male, age 61, both hemispheres 2.2
Nucleus of the diagonal band
nTPM: 2.5
1812 Female, age 91, both hemispheres 3.0
2029 Male, age 61, right hemisphere 2.8
1979 Male, age 74, unknown 2.3
2195 Female, age 85, both hemispheres 2.3
2775 Male, age 80, right hemisphere 2.1
Olfactory tubercle
nTPM: 2.3
2856 Male, age 75, right hemisphere 2.5
1846 Male, age 80, right hemisphere 2.2
1998 Female, age 91, both hemispheres 2.2
2487 Female, age 94, left hemisphere 2.2
Putamen
nTPM: 2.4
2482 Female, age 94, left hemisphere 2.8
1829 Male, age 74, unknown 2.7
2466 Female, age 79, unknown 2.7
1937 Female, age 91, right hemisphere 2.6
2489 Female, age 72, unknown 2.4
1838 Male, age 80, right hemisphere 1.9
2647 Male, age 75, left hemisphere 1.8
Septal nuclei
nTPM: 2.7
2009 Female, age 91, both hemispheres 3.3
2199 Male, age 80, right hemisphere 3.3
2394 Male, age 61, left hemisphere 2.7
2059 Female, age 85, both hemispheres 2.6
2629 Female, age 94, right hemisphere 2.5
1960 Male, age 74, unknown 2.2
2031 Female, age 72, unknown 2.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 2.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 2.2
Samples: 246

Max nTPM: 19.9
Min nTPM: 0.0
Std nTPM: 3.0
Median nTPM: 1.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 19.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 18.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 16.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 12.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 11.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 10.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 10.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 10.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 9.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 9.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 8.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 2.0
Samples: 246

Max nTPM: 21.7
Min nTPM: 0.0
Std nTPM: 3.4
Median nTPM: 0.7
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 21.7
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 20.0
GTEX-14PN4-0011-R6b-SM-69LQU 50-59 years, male 17.3
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 16.9
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 16.8
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 13.3
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 12.5
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 10.8
GTEX-1F48J-0011-R6a-SM-CJI2F 50-59 years, female 10.5
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 10.3
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 9.7
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Brain - Putamen (basal ganglia)
Average nTPM: 1.7
Samples: 205

Max nTPM: 21.2
Min nTPM: 0.0
Std nTPM: 2.5
Median nTPM: 0.9
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 21.2
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 15.7
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 11.5
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 10.8
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 10.2
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 10.0
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 8.9
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 8.7
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 6.5
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 6.3
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 6.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1.0
FF:10164-103B2 76 years, female 1.0
Globus pallidus
Scaled Tags Per Million: 2.4
FF:10161-103A8 76 years, female 4.8
FF:10175-103C4 60 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 0.4
FF:10037-101F1 23-56 years, mixed 0.4
Putamen
Scaled Tags Per Million: 0.2
FF:10176-103C5 60 years, female 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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