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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:83.8 nTPM
HPA:83.8 nTPM
GTEx:65.2 nTPM
FANTOM5:119.2 Scaled Tags Per Million
Pig:38.4 nTPM
Mouse:40.8 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 83.8
Sample id Sample description nTPM
Amygdala
nTPM: 76.8
2695 Female, age 67, right hemisphere 87.6
2517 Female, age 94, left hemisphere 83.6
2514 Male, age 75, right hemisphere 77.1
2814 Male, age 76, right hemisphere 74.0
1987 Female, age 91, left hemisphere 61.5
Basal amygdala
nTPM: 80.7
2685 Female, age 94, left hemisphere 95.2
2110 Male, age 80, left hemisphere 87.7
2827 Female, age 67, right hemisphere 85.0
2243 Female, age 91, right hemisphere 73.4
2609 Male, age 75, right hemisphere 72.5
1955 Male, age 76, both hemispheres 70.4
Central amygdala
nTPM: 77.5
2826 Female, age 94, left hemisphere 91.5
2239 Male, age 80, left hemisphere 79.8
1905 Male, age 76, both hemispheres 74.9
2515 Male, age 75, right hemisphere 72.4
2701 Female, age 91, right hemisphere 69.1
Corticomedial amygdala
nTPM: 79.1
2429 Female, age 94, left hemisphere 94.2
2829 Male, age 80, left hemisphere 92.9
2428 Male, age 75, right hemisphere 81.8
2535 Female, age 67, right hemisphere 74.7
2242 Female, age 91, right hemisphere 68.1
2240 Male, age 76, both hemispheres 63.2
Lateral amygdala
nTPM: 83.8
2830 Female, age 67, right hemisphere 98.2
2516 Male, age 75, right hemisphere 97.2
2534 Female, age 94, left hemisphere 88.7
2256 Male, age 80, left hemisphere 81.6
2255 Female, age 91, right hemisphere 76.4
1883 Male, age 76, both hemispheres 60.7
Stria terminalis, bed nucleus
nTPM: 72.0
1974 Female, age 91, both hemispheres 81.1
2486 Female, age 94, both hemispheres 72.3
2201 Male, age 74, unknown 62.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 65.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 65.2
Samples: 152

Max nTPM: 107.7
Min nTPM: 33.0
Std nTPM: 17.6
Median nTPM: 62.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 107.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 105.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 104.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 101.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 100.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 99.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 98.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 97.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 97.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 96.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 94.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 94.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 93.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 93.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 92.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 90.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 90.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 89.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 86.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 86.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 86.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 85.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 85.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 85.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 84.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 84.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 82.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 82.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 82.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 81.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 81.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 79.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 78.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 78.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 77.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 77.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 77.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 76.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 76.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 76.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 76.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 76.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 75.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 75.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 75.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 74.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 73.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 73.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 72.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 72.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 72.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 72.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 72.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 72.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 71.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 71.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 71.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 70.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 69.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 69.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 68.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 68.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 67.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 67.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 66.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 65.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 65.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 64.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 64.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 63.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 63.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 63.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 63.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 63.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 62.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 62.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 62.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 62.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 62.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 62.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 62.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 62.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 62.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 61.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 61.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 61.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 61.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 60.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 60.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 60.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 60.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 59.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 59.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 58.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 57.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 57.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 57.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 57.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 57.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 57.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 56.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 56.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 56.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 55.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 54.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 53.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 53.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 53.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 52.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 52.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 52.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 52.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 50.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 50.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 50.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 49.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 49.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 49.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 48.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 48.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 48.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 48.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 48.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 48.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 48.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 47.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 47.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 46.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 46.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 45.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 45.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 45.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 44.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 44.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 44.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 44.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 43.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 43.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 42.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 42.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 42.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 41.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 41.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 41.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 39.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 39.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 37.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 37.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 35.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 34.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 33.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 33.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 119.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 119.2
FF:10151-102I7 76 years, female 119.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 38.4
Pig sample Sample description nTPM
Amygdala
nTPM: 38.4
Samples: 4

Max nTPM: 41.6
Min nTPM: 36.0
Sample A Female 41.6
Sample B Female 39.4
Sample C Male 36.7
Sample D Male 36.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 40.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 40.9
Samples: 4

Max nTPM: 43.0
Min nTPM: 37.5
Sample A Male 37.5
Sample B Male 42.2
Sample C Female 40.7
Sample D Female 43.0

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