MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:87.6 nTPM
HPA:87.6 nTPM
GTEx:70.1 nTPM
FANTOM5:168.4 Scaled Tags Per Million
Pig:49.7 nTPM
Mouse:28.5 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 87.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 74.1
2411 Female, age 72, unknown 94.6
1830 Male, age 51, unknown 87.5
1833 Male, age 53, unknown 86.9
2019 Male, age 18, unknown 81.6
1870 Female, age 42, unknown 69.4
2586 Male, age 75, left hemisphere 68.2
2828 Female, age 72, unknown 67.5
2666 Male, age 74, left hemisphere 65.6
2219 Male, age 76, both hemispheres 60.7
1827 Male, age 72, unknown 59.1
Dorsal raphe nucleus
nTPM: 60.3
2750 Male, age 76, both hemispheres 73.7
2016 Female, age 72, unknown 65.8
1828 Male, age 53, unknown 60.1
2047 Male, age 72, unknown 51.0
2298 Female, age 72, unknown 51.0
Inferior colliculus
nTPM: 62.4
1890 Male, age 53, unknown 65.9
2849 Male, age 72, unknown 65.1
1848 Female, age 42, unknown 62.7
2097 Female, age 72, unknown 56.0
Median raphe nucleus
nTPM: 47.5
2220 Male, age 76, midline 47.5
Pedunculopontine tegmental nucleus
nTPM: 60.7
2338 Male, age 61, both hemispheres 61.2
1921 Female, age 85, both hemispheres 61.1
2334 Male, age 80, both hemispheres 59.8
Periaquaductal grey, anterior
nTPM: 60.1
2502 Female, age 75, unknown 69.8
1947 Male, age 18, unknown 59.5
1795 Male, age 51, unknown 51.0
Periaquaductal grey, dorsal
nTPM: 58.7
2464 Female, age 72, unknown 74.5
1840 Male, age 53, unknown 56.9
2850 Male, age 76, both hemispheres 52.4
1831 Male, age 72, unknown 51.0
Periaquaductal grey, lateral
nTPM: 60.1
2053 Male, age 18, unknown 64.6
2272 Male, age 74, both hemispheres 60.0
2140 Male, age 76, both hemispheres 55.6
Pretectal area
nTPM: 65.9
2667 Female, age 75, unknown 78.8
2316 Male, age 76, right hemisphere 77.5
2407 Male, age 75, both hemispheres 77.2
1815 Male, age 53, unknown 70.3
2007 Male, age 72, unknown 65.8
1817 Female, age 42, unknown 62.8
2825 Male, age 18, unknown 61.6
2273 Male, age 74, both hemispheres 59.7
1944 Female, age 72, unknown 59.6
1816 Male, age 51, unknown 56.3
2224 Female, age 72, unknown 54.9
Red nucleus
nTPM: 87.6
2503 Female, age 72, unknown 103.3
1865 Male, age 51, unknown 102.9
1904 Male, age 53, unknown 99.0
2823 Male, age 76, right hemisphere 96.1
2588 Male, age 74, left hemisphere 90.6
2227 Male, age 72, unknown 88.0
2769 Male, age 72, unknown 87.8
1821 Female, age 72, unknown 82.4
2785 Male, age 18, unknown 82.2
2584 Male, age 75, left hemisphere 81.2
1954 Female, age 42, unknown 79.8
2725 Female, age 75, unknown 57.6
Substantia nigra
nTPM: 70.2
2409 Female, age 72, unknown 89.4
2241 Male, age 72, unknown 81.9
2583 Male, age 75, right hemisphere 79.1
1851 Male, age 51, unknown 76.9
2699 Male, age 18, unknown 75.7
2590 Female, age 75, unknown 63.5
2665 Male, age 74, both hemispheres 61.4
1889 Female, age 72, unknown 60.9
1941 Male, age 53, unknown 58.2
1916 Female, age 42, unknown 54.8
Superior colliculus
nTPM: 72.7
1913 Female, age 42, unknown 92.3
1995 Male, age 72, unknown 91.6
1895 Male, age 76, right hemisphere 85.8
2668 Female, age 75, unknown 83.6
2587 Male, age 74, left hemisphere 69.5
2087 Female, age 72, unknown 64.7
1839 Male, age 51, unknown 63.8
2261 Male, age 18, unknown 61.6
1796 Male, age 53, unknown 60.4
2664 Male, age 75, both hemispheres 53.2
Ventral tegmental area
nTPM: 66.7
2410 Female, age 72, unknown 84.2
2223 Female, age 72, unknown 72.6
1915 Female, age 42, unknown 64.2
1942 Male, age 51, unknown 63.0
2021 Male, age 53, unknown 61.1
2218 Male, age 76, both hemispheres 55.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 70.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 70.1
Samples: 139

Max nTPM: 160.7
Min nTPM: 32.6
Std nTPM: 25.0
Median nTPM: 62.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 160.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 160.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 154.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 141.0
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 139.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 136.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 121.0
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 109.1
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 108.6
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 108.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 108.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 168.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 168.4
FF:10158-103A5 76 years, female 168.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 49.7
Pig sample Sample description nTPM
Midbrain
nTPM: 49.7
Samples: 4

Max nTPM: 71.2
Min nTPM: 39.3
Sample A Female 71.2
Sample B Female 45.6
Sample C Male 42.6
Sample D Male 39.3
Periaqueductal gray
nTPM: 37.6
Samples: 3

Max nTPM: 42.2
Min nTPM: 34.9
Sample B Female 42.2
Sample C Male 34.9
Sample D Male 35.7
Substantia nigra
nTPM: 49.1
Samples: 4

Max nTPM: 61.5
Min nTPM: 40.6
Sample A Female 48.9
Sample B Female 40.6
Sample C Male 45.3
Sample D Male 61.5
Superior colliculi
nTPM: 42.9
Samples: 4

Max nTPM: 46.8
Min nTPM: 35.7
Sample A Female 45.0
Sample B Female 35.7
Sample C Male 44.0
Sample D Male 46.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 28.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.5
Samples: 4

Max nTPM: 30.2
Min nTPM: 26.3
Sample A Male 29.3
Sample B Male 26.3
Sample C Female 30.2
Sample D Female 28.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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