MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:46.6 nTPM
HPA:46.6 nTPM
GTEx:32.7 nTPM
FANTOM5:34.8 Scaled Tags Per Million
Pig:22.9 nTPM
Mouse:50.7 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 46.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.7
2219 Male, age 76, both hemispheres 35.0
2828 Female, age 72, unknown 33.6
1833 Male, age 53, unknown 32.4
1870 Female, age 42, unknown 32.1
1827 Male, age 72, unknown 31.3
2411 Female, age 72, unknown 31.1
2586 Male, age 75, left hemisphere 28.6
1830 Male, age 51, unknown 27.4
2666 Male, age 74, left hemisphere 23.7
2019 Male, age 18, unknown 21.5
Dorsal raphe nucleus
nTPM: 36.6
2016 Female, age 72, unknown 42.0
2298 Female, age 72, unknown 40.8
1828 Male, age 53, unknown 38.1
2047 Male, age 72, unknown 32.4
2750 Male, age 76, both hemispheres 29.8
Inferior colliculus
nTPM: 35.5
2097 Female, age 72, unknown 40.4
1890 Male, age 53, unknown 34.2
2849 Male, age 72, unknown 33.9
1848 Female, age 42, unknown 33.7
Median raphe nucleus
nTPM: 35.4
2220 Male, age 76, midline 35.4
Pedunculopontine tegmental nucleus
nTPM: 32.9
1921 Female, age 85, both hemispheres 34.7
2334 Male, age 80, both hemispheres 33.1
2338 Male, age 61, both hemispheres 31.0
Periaquaductal grey, anterior
nTPM: 34.2
1947 Male, age 18, unknown 35.3
2502 Female, age 75, unknown 35.3
1795 Male, age 51, unknown 32.0
Periaquaductal grey, dorsal
nTPM: 40.2
2850 Male, age 76, both hemispheres 47.1
1840 Male, age 53, unknown 43.0
1831 Male, age 72, unknown 35.6
2464 Female, age 72, unknown 35.2
Periaquaductal grey, lateral
nTPM: 43.7
2140 Male, age 76, both hemispheres 45.7
2053 Male, age 18, unknown 45.4
2272 Male, age 74, both hemispheres 39.9
Pretectal area
nTPM: 35.2
2224 Female, age 72, unknown 46.2
2273 Male, age 74, both hemispheres 44.8
1944 Female, age 72, unknown 42.9
2667 Female, age 75, unknown 40.4
2825 Male, age 18, unknown 37.1
2316 Male, age 76, right hemisphere 32.8
2407 Male, age 75, both hemispheres 32.0
1816 Male, age 51, unknown 31.4
1815 Male, age 53, unknown 29.4
1817 Female, age 42, unknown 27.5
2007 Male, age 72, unknown 22.6
Red nucleus
nTPM: 29.8
2725 Female, age 75, unknown 35.0
1821 Female, age 72, unknown 34.9
1954 Female, age 42, unknown 33.2
2769 Male, age 72, unknown 32.8
2823 Male, age 76, right hemisphere 32.0
2227 Male, age 72, unknown 31.9
2503 Female, age 72, unknown 31.2
1904 Male, age 53, unknown 30.9
1865 Male, age 51, unknown 28.9
2588 Male, age 74, left hemisphere 23.4
2584 Male, age 75, left hemisphere 22.1
2785 Male, age 18, unknown 21.5
Substantia nigra
nTPM: 46.6
2699 Male, age 18, unknown 81.7
1916 Female, age 42, unknown 70.6
2241 Male, age 72, unknown 60.2
1851 Male, age 51, unknown 52.0
1941 Male, age 53, unknown 40.3
2409 Female, age 72, unknown 39.7
1889 Female, age 72, unknown 33.2
2590 Female, age 75, unknown 30.2
2665 Male, age 74, both hemispheres 29.7
2583 Male, age 75, right hemisphere 28.0
Superior colliculus
nTPM: 33.4
2087 Female, age 72, unknown 41.1
1995 Male, age 72, unknown 37.6
2261 Male, age 18, unknown 36.5
1796 Male, age 53, unknown 33.6
1913 Female, age 42, unknown 32.4
2668 Female, age 75, unknown 31.0
2587 Male, age 74, left hemisphere 30.7
2664 Male, age 75, both hemispheres 30.7
1839 Male, age 51, unknown 30.3
1895 Male, age 76, right hemisphere 29.9
Ventral tegmental area
nTPM: 46.0
1915 Female, age 42, unknown 55.3
1942 Male, age 51, unknown 52.2
2410 Female, age 72, unknown 49.8
2218 Male, age 76, both hemispheres 49.2
2021 Male, age 53, unknown 40.2
2223 Female, age 72, unknown 29.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 32.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.7
Samples: 139

Max nTPM: 94.8
Min nTPM: 5.4
Std nTPM: 17.3
Median nTPM: 28.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 94.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 83.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 78.4
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 73.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 73.5
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 69.9
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 68.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 66.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 65.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 62.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 60.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.8
FF:10158-103A5 76 years, female 34.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.9
Pig sample Sample description nTPM
Midbrain
nTPM: 15.7
Samples: 4

Max nTPM: 18.6
Min nTPM: 12.7
Sample A Female 13.2
Sample B Female 18.1
Sample C Male 12.7
Sample D Male 18.6
Periaqueductal gray
nTPM: 20.9
Samples: 3

Max nTPM: 24.9
Min nTPM: 16.7
Sample B Female 16.7
Sample C Male 24.9
Sample D Male 21.1
Substantia nigra
nTPM: 21.2
Samples: 4

Max nTPM: 26.4
Min nTPM: 11.7
Sample A Female 26.4
Sample B Female 25.7
Sample C Male 20.8
Sample D Male 11.7
Superior colliculi
nTPM: 22.9
Samples: 4

Max nTPM: 37.0
Min nTPM: 10.7
Sample A Female 24.2
Sample B Female 37.0
Sample C Male 10.7
Sample D Male 19.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 50.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 50.8
Samples: 4

Max nTPM: 53.0
Min nTPM: 48.4
Sample A Male 48.4
Sample B Male 53.0
Sample C Female 49.8
Sample D Female 51.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
72080155 Antisense, RP_051017_03_C11, Mouse strain C57BL/6J (56 days, male) 1.5
69012849 Antisense, RP_050309_01_F03, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.