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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:185.6 nTPM
HPA:185.6 nTPM
GTEx:90.4 nTPM
FANTOM5:240.8 Scaled Tags Per Million
Pig:100.7 nTPM
Mouse:29.7 nTPM
Allen mouse:13.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 185.6
Sample id Sample description nTPM
Amygdala
nTPM: 112.1
2695 Female, age 67, right hemisphere 159.6
2514 Male, age 75, right hemisphere 117.7
2814 Male, age 76, right hemisphere 112.6
2517 Female, age 94, left hemisphere 110.1
1987 Female, age 91, left hemisphere 60.3
Basal amygdala
nTPM: 124.8
2827 Female, age 67, right hemisphere 273.9
2685 Female, age 94, left hemisphere 131.8
2609 Male, age 75, right hemisphere 110.4
2110 Male, age 80, left hemisphere 98.3
1955 Male, age 76, both hemispheres 72.1
2243 Female, age 91, right hemisphere 62.4
Central amygdala
nTPM: 151.4
2826 Female, age 94, left hemisphere 347.6
2239 Male, age 80, left hemisphere 120.4
2515 Male, age 75, right hemisphere 108.0
1905 Male, age 76, both hemispheres 91.6
2701 Female, age 91, right hemisphere 89.3
Corticomedial amygdala
nTPM: 88.7
2535 Female, age 67, right hemisphere 152.0
2428 Male, age 75, right hemisphere 102.3
2429 Female, age 94, left hemisphere 90.7
2240 Male, age 76, both hemispheres 76.7
2829 Male, age 80, left hemisphere 62.5
2242 Female, age 91, right hemisphere 48.1
Lateral amygdala
nTPM: 185.6
2830 Female, age 67, right hemisphere 362.9
2534 Female, age 94, left hemisphere 195.2
2516 Male, age 75, right hemisphere 183.2
2256 Male, age 80, left hemisphere 163.2
2255 Female, age 91, right hemisphere 107.3
1883 Male, age 76, both hemispheres 101.7
Stria terminalis, bed nucleus
nTPM: 66.3
1974 Female, age 91, both hemispheres 87.8
2201 Male, age 74, unknown 69.9
2486 Female, age 94, both hemispheres 41.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 90.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 90.4
Samples: 152

Max nTPM: 316.3
Min nTPM: 20.9
Std nTPM: 54.1
Median nTPM: 72.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 316.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 270.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 265.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 239.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 209.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 206.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 205.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 198.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 193.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 193.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 188.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 182.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 175.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 173.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 170.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 168.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 166.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 161.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 161.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 158.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 158.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 157.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 150.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 147.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 143.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 142.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 137.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 134.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 132.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 128.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 124.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 123.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 122.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 120.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 119.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 118.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 117.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 116.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 116.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 112.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 108.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 108.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 107.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 105.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 104.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 103.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 103.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 103.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 102.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 99.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 99.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 99.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 96.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 95.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 93.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 91.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 91.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 91.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 91.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 90.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 86.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 85.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 85.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 84.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 84.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 84.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 83.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 83.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 79.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 76.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 76.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 75.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 75.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 75.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 74.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 72.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 71.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 69.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 68.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 68.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 67.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 67.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 67.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 65.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 64.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 64.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 63.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 63.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 62.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 61.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 61.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 58.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 57.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 57.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 57.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 57.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 56.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 56.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 56.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 56.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 55.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 54.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 54.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 54.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 52.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 52.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 52.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 51.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 51.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 51.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 50.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 50.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 50.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 49.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 49.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 49.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 49.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 48.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 48.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 48.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 48.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 48.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 48.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 48.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 48.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 48.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 47.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 46.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 46.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 44.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 44.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 44.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 44.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 43.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 43.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 43.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 42.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 42.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 42.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 41.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 41.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 40.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 39.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 38.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 35.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 35.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 33.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 31.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 31.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 29.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 29.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 20.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 240.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 240.9
FF:10151-102I7 76 years, female 240.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 100.7
Pig sample Sample description nTPM
Amygdala
nTPM: 100.7
Samples: 4

Max nTPM: 114.7
Min nTPM: 79.9
Sample A Female 105.2
Sample B Female 114.7
Sample C Male 102.9
Sample D Male 79.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 29.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 29.7
Samples: 4

Max nTPM: 31.3
Min nTPM: 28.6
Sample A Male 31.3
Sample B Male 28.6
Sample C Female 30.2
Sample D Female 28.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 13.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 13.1
68844468 Antisense, RP_050222_01_F10, Mouse strain C57BL/6J (56 days, male) 14.6
71924066 Antisense, RP_051017_02_H07, Mouse strain C57BL/6J (56 days, male) 11.6

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