MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:214.5 nTPM
HPA:214.5 nTPM
GTEx:112.7 nTPM
FANTOM5:405.7 Scaled Tags Per Million
Pig:162.4 nTPM
Mouse:28.1 nTPM
Allen mouse:5.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 214.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 153.2
1830 Male, age 51, unknown 229.3
1833 Male, age 53, unknown 192.7
2586 Male, age 75, left hemisphere 165.7
2411 Female, age 72, unknown 161.0
2019 Male, age 18, unknown 160.6
1870 Female, age 42, unknown 158.3
2666 Male, age 74, left hemisphere 144.6
2828 Female, age 72, unknown 128.4
1827 Male, age 72, unknown 96.7
2219 Male, age 76, both hemispheres 95.1
Dorsal raphe nucleus
nTPM: 102.2
2750 Male, age 76, both hemispheres 208.2
2016 Female, age 72, unknown 121.1
1828 Male, age 53, unknown 93.5
2047 Male, age 72, unknown 55.3
2298 Female, age 72, unknown 32.9
Inferior colliculus
nTPM: 91.9
2849 Male, age 72, unknown 121.7
1848 Female, age 42, unknown 102.0
1890 Male, age 53, unknown 94.7
2097 Female, age 72, unknown 49.3
Median raphe nucleus
nTPM: 78.9
2220 Male, age 76, midline 78.9
Pedunculopontine tegmental nucleus
nTPM: 140.6
2338 Male, age 61, both hemispheres 168.5
2334 Male, age 80, both hemispheres 151.0
1921 Female, age 85, both hemispheres 102.2
Periaquaductal grey, anterior
nTPM: 88.0
2502 Female, age 75, unknown 103.6
1947 Male, age 18, unknown 92.7
1795 Male, age 51, unknown 67.6
Periaquaductal grey, dorsal
nTPM: 66.0
2464 Female, age 72, unknown 112.2
1831 Male, age 72, unknown 69.7
1840 Male, age 53, unknown 47.1
2850 Male, age 76, both hemispheres 34.9
Periaquaductal grey, lateral
nTPM: 64.1
2272 Male, age 74, both hemispheres 83.3
2053 Male, age 18, unknown 76.1
2140 Male, age 76, both hemispheres 32.8
Pretectal area
nTPM: 88.3
2316 Male, age 76, right hemisphere 149.1
2407 Male, age 75, both hemispheres 146.4
1815 Male, age 53, unknown 135.3
2825 Male, age 18, unknown 105.2
1817 Female, age 42, unknown 92.5
2007 Male, age 72, unknown 78.7
2273 Male, age 74, both hemispheres 68.8
2224 Female, age 72, unknown 62.1
2667 Female, age 75, unknown 45.6
1816 Male, age 51, unknown 44.7
1944 Female, age 72, unknown 42.9
Red nucleus
nTPM: 214.5
1865 Male, age 51, unknown 246.3
2503 Female, age 72, unknown 244.0
1904 Male, age 53, unknown 243.0
2227 Male, age 72, unknown 239.5
2823 Male, age 76, right hemisphere 239.5
2769 Male, age 72, unknown 213.6
2588 Male, age 74, left hemisphere 211.7
1821 Female, age 72, unknown 204.8
1954 Female, age 42, unknown 201.3
2785 Male, age 18, unknown 186.1
2725 Female, age 75, unknown 175.4
2584 Male, age 75, left hemisphere 169.2
Substantia nigra
nTPM: 113.5
2590 Female, age 75, unknown 160.6
2583 Male, age 75, right hemisphere 152.8
2699 Male, age 18, unknown 131.7
2665 Male, age 74, both hemispheres 124.4
1851 Male, age 51, unknown 122.2
1889 Female, age 72, unknown 103.4
2241 Male, age 72, unknown 99.6
2409 Female, age 72, unknown 97.1
1941 Male, age 53, unknown 80.6
1916 Female, age 42, unknown 62.4
Superior colliculus
nTPM: 131.0
1913 Female, age 42, unknown 193.3
1995 Male, age 72, unknown 191.7
1895 Male, age 76, right hemisphere 151.8
2587 Male, age 74, left hemisphere 145.5
2668 Female, age 75, unknown 144.9
1839 Male, age 51, unknown 140.8
2664 Male, age 75, both hemispheres 120.4
1796 Male, age 53, unknown 87.5
2087 Female, age 72, unknown 67.0
2261 Male, age 18, unknown 67.0
Ventral tegmental area
nTPM: 127.7
2223 Female, age 72, unknown 193.2
2410 Female, age 72, unknown 148.9
1942 Male, age 51, unknown 109.9
2021 Male, age 53, unknown 107.4
2218 Male, age 76, both hemispheres 107.0
1915 Female, age 42, unknown 99.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 112.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 112.7
Samples: 139

Max nTPM: 340.8
Min nTPM: 27.0
Std nTPM: 59.0
Median nTPM: 99.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 340.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 305.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 282.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 276.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 275.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 255.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 228.3
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 227.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 227.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 219.7
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 203.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 405.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 405.7
FF:10158-103A5 76 years, female 405.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 162.4
Pig sample Sample description nTPM
Midbrain
nTPM: 155.2
Samples: 4

Max nTPM: 268.0
Min nTPM: 89.7
Sample A Female 268.0
Sample B Female 171.3
Sample C Male 89.7
Sample D Male 91.8
Periaqueductal gray
nTPM: 120.6
Samples: 3

Max nTPM: 144.8
Min nTPM: 94.0
Sample B Female 144.8
Sample C Male 94.0
Sample D Male 123.1
Substantia nigra
nTPM: 162.4
Samples: 4

Max nTPM: 252.2
Min nTPM: 125.8
Sample A Female 142.1
Sample B Female 125.8
Sample C Male 129.5
Sample D Male 252.2
Superior colliculi
nTPM: 119.5
Samples: 4

Max nTPM: 157.3
Min nTPM: 68.0
Sample A Female 123.7
Sample B Female 68.0
Sample C Male 129.1
Sample D Male 157.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 28.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.1
Samples: 4

Max nTPM: 30.6
Min nTPM: 26.2
Sample A Male 26.4
Sample B Male 26.2
Sample C Female 29.1
Sample D Female 30.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.0
68844468 Antisense, RP_050222_01_F10, Mouse strain C57BL/6J (56 days, male) 5.9
71924066 Antisense, RP_051017_02_H07, Mouse strain C57BL/6J (56 days, male) 4.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.