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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:235.7 nTPM
HPA:235.7 nTPM
GTEx:208.1 nTPM
FANTOM5:222.0 Scaled Tags Per Million
Pig:44.5 nTPM
Mouse:411.6 nTPM
Allen mouse:10.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 235.7
Sample id Sample description nTPM
Amygdala
nTPM: 234.9
2814 Male, age 76, right hemisphere 240.4
2514 Male, age 75, right hemisphere 237.8
2517 Female, age 94, left hemisphere 234.3
1987 Female, age 91, left hemisphere 232.7
2695 Female, age 67, right hemisphere 229.3
Basal amygdala
nTPM: 228.8
2685 Female, age 94, left hemisphere 234.4
2609 Male, age 75, right hemisphere 232.1
2110 Male, age 80, left hemisphere 231.7
2827 Female, age 67, right hemisphere 227.0
2243 Female, age 91, right hemisphere 224.0
1955 Male, age 76, both hemispheres 223.4
Central amygdala
nTPM: 231.4
2826 Female, age 94, left hemisphere 246.9
1905 Male, age 76, both hemispheres 235.3
2515 Male, age 75, right hemisphere 234.1
2239 Male, age 80, left hemisphere 221.5
2701 Female, age 91, right hemisphere 219.4
Corticomedial amygdala
nTPM: 228.4
2428 Male, age 75, right hemisphere 239.0
2829 Male, age 80, left hemisphere 235.9
2429 Female, age 94, left hemisphere 230.7
2242 Female, age 91, right hemisphere 224.1
2240 Male, age 76, both hemispheres 221.5
2535 Female, age 67, right hemisphere 219.1
Lateral amygdala
nTPM: 230.5
2534 Female, age 94, left hemisphere 241.0
2516 Male, age 75, right hemisphere 240.3
1883 Male, age 76, both hemispheres 236.1
2830 Female, age 67, right hemisphere 227.4
2256 Male, age 80, left hemisphere 219.6
2255 Female, age 91, right hemisphere 218.5
Stria terminalis, bed nucleus
nTPM: 235.7
1974 Female, age 91, both hemispheres 252.0
2486 Female, age 94, both hemispheres 234.0
2201 Male, age 74, unknown 221.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 208.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 208.1
Samples: 152

Max nTPM: 875.3
Min nTPM: 101.2
Std nTPM: 93.5
Median nTPM: 184.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 875.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 534.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 514.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 470.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 447.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 433.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 387.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 357.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 352.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 319.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 317.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 311.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 301.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 295.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 294.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 293.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 289.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 286.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 279.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 273.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 270.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 270.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 268.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 264.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 264.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 263.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 261.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 255.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 255.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 254.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 252.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 252.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 252.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 251.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 248.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 244.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 240.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 240.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 237.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 236.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 235.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 234.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 233.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 232.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 232.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 229.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 226.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 225.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 223.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 222.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 218.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 218.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 217.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 216.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 206.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 204.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 204.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 203.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 202.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 201.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 201.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 201.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 198.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 197.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 196.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 195.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 195.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 195.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 194.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 193.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 191.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 190.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 190.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 190.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 185.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 185.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 183.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 183.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 182.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 182.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 180.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 179.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 178.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 178.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 178.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 177.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 177.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 176.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 175.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 175.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 174.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 174.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 173.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 173.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 172.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 169.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 168.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 168.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 167.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 166.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 166.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 165.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 165.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 164.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 160.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 159.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 158.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 157.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 156.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 156.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 154.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 154.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 152.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 150.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 149.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 149.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 149.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 147.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 147.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 146.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 146.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 143.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 143.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 140.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 139.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 138.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 138.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 137.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 136.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 135.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 132.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 131.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 131.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 129.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 129.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 129.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 128.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 128.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 127.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 126.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 125.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 125.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 124.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 121.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 118.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 117.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 117.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 115.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 110.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 108.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 108.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 101.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 222.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 222.0
FF:10151-102I7 76 years, female 222.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 44.5
Pig sample Sample description nTPM
Amygdala
nTPM: 44.5
Samples: 4

Max nTPM: 63.0
Min nTPM: 36.9
Sample A Female 63.0
Sample B Female 41.3
Sample C Male 36.9
Sample D Male 36.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 411.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 411.6
Samples: 4

Max nTPM: 427.0
Min nTPM: 400.9
Sample A Male 401.2
Sample B Male 417.2
Sample C Female 427.0
Sample D Female 400.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 10.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 10.0
69735001 Antisense, RP_050503_01_H04, Mouse strain C57BL/6J (56 days, male) 12.2
73520984 Antisense, RP_051101_02_G03, Mouse strain C57BL/6J (56 days, male) 7.8

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